KEGG   Vibrio cholerae O49 1154-74: VAA049_3392
Entry
VAA049_3392       CDS       T03828                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
vcx  Vibrio cholerae O49 1154-74
Pathway
vcx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vcx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VAA049_3392 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vcx03021]
    VAA049_3392 (rho)
   03019 Messenger RNA biogenesis [BR:vcx03019]
    VAA049_3392 (rho)
Transcription machinery [BR:vcx03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     VAA049_3392 (rho)
Messenger RNA biogenesis [BR:vcx03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     VAA049_3392 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT AAA_22 AAA_25 OB_RNB AAA Spore_III_AA
Other DBs
NCBI-ProteinID: AKB02051
UniProt: A0A085T5S3
Position
complement(3730487..3731746)
AA seq 419 aa
MNLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVN
DDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPP
KAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
NRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAMRRQ
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgaatctaacagaactgaagaacacccctgtgtctgatctggttaagcttggcgaaagt
ctgggccttgaaaacctggcacgcctacgcaaacaagacattattttcgcaatcctcaaa
gcacacgcaaaaagtggtgaagacatttttggcgatggggttctggaaattcttcaagac
ggttttggtttcttacgtagtgcagacagttcataccttgctggccctgacgacatctat
gtgtcacctagccaaattcgtcgctttaacctacgtacaggcgactcaattgccgggaaa
attcgtccgccgaaagagggtgaacgttactttgcattgctcaaagtgaacactgtgaac
gatgaccgtccagataacgcccgcaacaaaatccttttcgagaacttaactcctctacac
gccaatgaacgtatggtgatggaacgtggcaatggctccacagaagacatcacggcgcgt
gttctcgatttggcagcaccgattggtaaaggtcaacgtggtttgatcgttgctccgcca
aaagcgggtaaaaccatgctgctacaaaacatcgctcaaagcatcgccagcaatcaccct
gagtgtgtgctgatggtactgctgattgacgagcgtccagaagaagtgactgagatgcag
cgcctagtaaaaggtgaagtggttgcttcaacctttgatgagccagcatcgcgccacgta
caagtggcagaaatggtgattgaaaaagccaaacgtctggttgaacacaagaaagacgtg
gtgatcctactggattcaattactcgtctagcgcgtgcctacaacactgtggttcctgcc
tctggtaaagtactgaccggtggtgtggatgcgaacgcattgcatcgtcctaagcgtttc
tttggggctgcacgtaatgtagaagaaggcggtagcttgaccattatcgctactgcgctg
gttgataccggttctaagatggatgaggtgatttacgaagagttcaaaggtacaggtaac
atggaactgcacttgaaccgtaagattgctgaaaaacgtgttttcccagctatcgacttc
aaccgttcaggtacgcgccgtgaagagttactgactaagaccgatgagctacaaaagatg
tggattctacgcaagatcgttcacccaatgggcgaaaccgatgcgatggaatttctgatt
gataagttagccatgaccaaaaccaacgatgagttctttgacgcgatgcgtcgacagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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