KEGG   Vibrio cholerae O27 10432-62: VAB027_3485
Entry
VAB027_3485       CDS       T03829                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
vcz  Vibrio cholerae O27 10432-62
Pathway
vcz02024  Quorum sensing
vcz03018  RNA degradation
vcz05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vcz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VAB027_3485 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    VAB027_3485 (hfq)
   05111 Biofilm formation - Vibrio cholerae
    VAB027_3485 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vcz03019]
    VAB027_3485 (hfq)
   03036 Chromosome and associated proteins [BR:vcz03036]
    VAB027_3485 (hfq)
Messenger RNA biogenesis [BR:vcz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     VAB027_3485 (hfq)
Chromosome and associated proteins [BR:vcz03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    VAB027_3485 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AKB05549
UniProt: A0A085SA74
Position
complement(3782869..3783132)
AA seq 87 aa
MAKGQSLQDPFLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILLKNTVNQMVYKHAIS
TVVPARPVSHHSGDRPASDRPAEKSEE
NT seq 264 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctctacaagacccatttctgaatgcactacgtcgtgaacgtatc
cctgtttctatctaccttgtgaacggcattaaactgcaaggtcagatcgaatcatttgat
caatttgtgatcttgctgaagaacacagtaaaccaaatggtttacaagcatgcgatttct
actgtggttcctgctcgtccagttagccaccacagcggcgaccgcccagcatcggatcgt
ccagcagagaagtctgaagagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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