KEGG   Verticillium dahliae: VDAG_03750
Entry
VDAG_03750        CDS       T03450                                 
Name
(RefSeq) DNA repair helicase RAD25
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
vda  Verticillium dahliae
Pathway
vda03022  Basal transcription factors
vda03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vda00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    VDAG_03750
  09124 Replication and repair
   03420 Nucleotide excision repair
    VDAG_03750
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vda03021]
    VDAG_03750
   03400 DNA repair and recombination proteins [BR:vda03400]
    VDAG_03750
Enzymes [BR:vda01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     VDAG_03750
Transcription machinery [BR:vda03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     VDAG_03750
DNA repair and recombination proteins [BR:vda03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     VDAG_03750
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C SNF2-rel_dom DEAD SIN1 AAA_34
Other DBs
NCBI-GeneID: 20705213
NCBI-ProteinID: XP_009652129
UniProt: G2X0H1
Position
3
AA seq 792 aa
MPPKRKAIGAVTGGGKVGKGSRVSTPAGAATPRSIGSDNESSAAEALSEGEEDVNIEKNV
GHFSVEGYERPSKSATSHIFGKRDYSYLNLKPDFQNRPLWIDASKARIFLESFSPLAQQC
QDFLITIAEPISRPSFVHEYALSPHSLYAAVSVGLSPADIINTLERFLKTPLPKQIREFI
EGCTASFGKVKLVLKNTKYFVESADPVVLQKLLQDPIIGPLRTHTGSGAITTTAAPKQAP
LVIPGTTNAAGVRQAGQANNAQGADADKAKEDEVYAALNDDDDEEAEFTHSFEIPDSAVE
DVQKRCLDLQYPVLEEYDFRKDEFNANLEIDLRPGAQIRPYQEKSLSKMFGNGRAKSGII
VLPCGAGKTLVGITAACTVKKGVIVLCTSSMSVVQWRNEFLKWSNIKPEDIAAFTSDNKG
QTFTGSTGIIVTTYSMVTQTRERSHEAKKMMDFLQHREWGLMLLDEVHVVPANIFRKVTS
SIKTHSKLGLTATLLREDDKISDLNFLIGPKLYEANWMELSQQGHIARVQCAEVWCSMPT
EFYDEYLKAPPRKRSLLYIMNPAKFQACQYLINYHESRGDKIIVFSDNVYALKAYAMKLK
KVFIYGETGQAERLQVLENFQHNPQVNTLFLSKIGDTSLDLPEATCLIQISSHYGSRRQE
AQRLGRILRAKRRNDEGFNAFFYSLVSKDTSEMFFSSKRQAFLVDQAERRELLEKVLVEN
VGNEEEFVDDLFHSGTMGRKPKKKGARRTAGMLGDLSGGQDMAYIEQNKKTKTKKGESSA
FFRKIQRQAAKK
NT seq 2379 nt   +upstreamnt  +downstreamnt
atgcctccgaaacgcaaggctatcggtgccgtcacaggcggtggcaaggttggtaaagga
tcacgagtctcgacgccagctggagctgccaccccgaggagcattggtagcgacaatgag
tcttccgcggcggaggcgttgagcgagggagaggaggacgtgaacattgagaagaacgtg
ggccatttctccgtagaaggatacgagcgcccctcaaagtctgcgacctcgcacatcttt
ggcaagcgcgattactcgtacctcaatctgaagccggactttcagaacagaccgctgtgg
atcgatgcgagcaaagcgaggatcttcctcgagagcttcagcccccttgcccagcagtgc
caggacttcctcatcaccattgccgagcccatctcccgaccttccttcgttcacgagtac
gccctttcgcctcacagtctatatgctgccgtttccgtcggtctatcgcccgccgatatc
atcaataccctcgagcggttcctcaagacgccgctgcctaaacaaattcgagaattcatc
gaaggatgcacagccagtttcggcaaggtcaagctcgtcttgaagaataccaagtacttc
gttgaaagcgcagaccctgtcgtcttgcagaagctgctgcaggaccccatcatcggacct
ctccgaacccacacaggcagtggcgcgatcacgaccaccgctgctccgaagcaggcgccc
ctcgtcatccctggcactaccaacgccgccggcgtgcgtcaggcaggacaagcgaacaat
gcacaaggcgccgacgccgataaggccaaggaggacgaggtgtatgctgcgttgaacgac
gatgatgacgaggaggccgaattcacgcattctttcgagattccggattctgctgttgag
gatgtccagaagaggtgccttgatctgcaatatcccgtgcttgaggagtacgacttcagg
aaagacgaatttaacgcgaacctggagatcgacctgcggcctggcgcgcagattcgtccg
taccaagagaagagtctgagtaagatgtttggtaacggtcgtgccaagagtggaatcatc
gtcttgccatgtggcgctggcaaaacgctcgtcggtatcacggcggcgtgcacagtgaag
aagggtgtcatcgtgctctgcacgagctccatgtcggttgtccaatggcgaaacgagttc
ctgaaatggtccaacatcaagccggaggacattgcggccttcacgtcagacaacaaggga
cagacctttacgggctctacgggcatcatcgtgacgacctactcgatggtaacgcagacc
agggagaggtcgcatgaggcgaaaaagatgatggacttcctccagcatcgcgagtggggc
ctcatgctgctcgacgaggtccacgtcgtaccggccaatattttccgaaaggtgacatcg
tcaatcaagacgcactccaaactcggtctcacggctacgcttcttcgtgaggatgacaag
atttcggatctcaactttctcatcggccccaagctgtacgaggcgaactggatggagctg
tcacaacaaggtcacattgcccgtgtgcagtgtgccgaggtgtggtgctccatgcccaca
gaattctacgacgaatacttgaaggcaccacctagaaagcgatcgctgctctacatcatg
aacccggccaagttccaggcgtgccagtatctgatcaactaccacgaatcgcggggcgac
aagatcatcgtcttctccgacaacgtgtatgccctcaaagcctatgcgatgaagctgaaa
aaggtcttcatctacggcgagaccggccaggcagagcggctgcaagtgctggagaacttc
caacacaacccgcaagtcaacacgctcttcctgtctaagattggagacacgtcgcttgac
ttgcccgaggccacatgcctcatccaaatctcgtcccactacggttcccgacgtcaggag
gcgcaacgtctcggccgtatcctgcgagcgaagcgcaggaacgacgaaggcttcaacgcc
tttttctactcgctcgtgtctaaggatacctccgaaatgttcttctcctcgaagcgccaa
gccttcctggttgaccaggccgagcgccgggagctcctggaaaaggtgctcgtcgagaac
gtgggcaacgaggaggaattcgtcgacgacctgtttcactcgggcaccatgggacgcaag
cctaagaagaagggcgcccgacgcacggcgggcatgcttggggatctctctggtggccag
gacatggcctacattgagcagaacaagaagacgaagaccaagaagggcgagagcagcgct
ttcttccggaagatccagaggcaagcggcgaagaagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (23)   

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