KEGG   Verticillium dahliae: VDAG_03923
Entry
VDAG_03923        CDS       T03450                                 
Name
(RefSeq) suppressor of stem-loop protein
  KO
K03142  transcription initiation factor TFIIH subunit 2
Organism
vda  Verticillium dahliae
Pathway
vda03022  Basal transcription factors
vda03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vda00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    VDAG_03923
  09124 Replication and repair
   03420 Nucleotide excision repair
    VDAG_03923
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vda03021]
    VDAG_03923
   03400 DNA repair and recombination proteins [BR:vda03400]
    VDAG_03923
Transcription machinery [BR:vda03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     VDAG_03923
DNA repair and recombination proteins [BR:vda03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     VDAG_03923
SSDB
Motif
Pfam: Ssl1 C1_4 VWA_2 zf-CCHC_2
Other DBs
NCBI-GeneID: 20705386
NCBI-ProteinID: XP_009652302
UniProt: G2X0Z4
Position
3
AA seq 461 aa
MSDSDGDFVESEDDRHRPSRPAGGGKEARKKKKAGKAAAWEVVKRSWETVEEGADGSLDV
EGRAEAEKRRRLLRDTTPLQRGIIRHLVLVLDMSFAMAEKDLLPTRLRLTWRLAREFVKE
YFEQNPISQMGIVGMRDGVAVRVSEMGGNPVEHVEAINKWAEIDPQGSPSLQNALEMCRG
ALFHAPSHGTREVLVVYGALLSSDPGDIHDTIANLLADRIRVSIVGLAAQVAICEELCRK
TNAGDATQYNIALDEMHYRELLLRTTTPPVTRTQAQSTASLLMMGFPSRTLAPADTTAYC
ACHNTPVREGYLCTRCGTRVCRLPAECPACGLTLILSTHLARSYHHLFPLRNWVEVPWAR
AAASRACYACLAPFPDPPPQRRGHRTNGTDGGDKEAAPVPKQKGVSESSRYACQVCGNHF
CIDCDVFAHEVIHNCPGCQSDARGAVTNGENGTNGAMDVDS
NT seq 1386 nt   +upstreamnt  +downstreamnt
atgtccgactccgacggcgactttgtcgagtccgaagacgaccgccacagaccctcgcgg
ccggcgggcggcggcaaggaggcgcgtaagaagaaaaaggccggcaaggcagcggcatgg
gaggtcgttaagcggtcgtgggagacggtcgaggagggcgccgacggcagcctcgacgtc
gaggggcgggccgaggccgagaagcggcggcggctgctgcgcgatacgacgccgctgcag
cgcggcatcatccggcacctcgtgctcgtgctcgacatgagcttcgccatggccgagaag
gacctgctgcccacgcggctgcggctcacgtggcgcctcgcgcgcgagttcgtcaaggag
tactttgagcagaaccccatctcgcagatgggcatcgtcggcatgcgcgacggcgtcgcc
gtccgcgtcagcgagatgggcggcaaccccgtcgagcatgtcgaggccatcaacaagtgg
gccgagattgacccgcagggcagcccgagtttgcagaatgcgctcgagatgtgtcgtggt
gccctgttccacgcgccgagccacggcacgagagaggtgctcgtcgtctacggcgccctg
ctgtcgagcgaccccggcgacatccacgacacgatcgcgaacctcctcgccgacaggata
cgcgtgtcgatcgtcgggctcgcggcccaggtggccatctgcgaggagctctgccgcaag
accaacgccggcgacgcgacgcagtacaacattgccctcgacgagatgcactaccgcgag
ctgctgctccgcacgacgacgccgcccgtgacgcgcacccaggcccagagcacggcctcg
ctcctcatgatgggcttcccctcgcgcaccctcgcccccgccgacacgacggcctactgc
gcctgccacaacacgcccgtccgggagggctacctctgcacccgctgcggcacccgcgtc
tgccgcctgcccgccgagtgtcccgcctgcggcctgaccctcatcctctccacccacctc
gcccgctcctaccaccacctcttcccgctgcgcaactgggtcgaggtcccctgggcccgc
gccgccgcctcgcgcgcctgctacgcgtgcctcgcgccgtttcccgacccgccgccccag
cgccgcggccacaggaccaacggcaccgacggcggcgacaaggaggcggcgccggtgccg
aagcaaaagggcgtcagcgagagcagtcgctacgcgtgtcaggtgtgcggcaaccacttc
tgcatagactgcgacgtctttgcgcacgaggtcatacacaactgccccggctgtcagagc
gacgcgcggggcgctgtcacgaacggggagaacgggacgaacggggcgatggacgtggac
agctag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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