KEGG   Verticillium dahliae: VDAG_04304
Entry
VDAG_04304        CDS       T03450                                 
Name
(RefSeq) ATP-dependent helicase SGS1
  KO
K10901  bloom syndrome protein [EC:5.6.2.4]
Organism
vda  Verticillium dahliae
Pathway
vda03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vda00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    VDAG_04304
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vda03032]
    VDAG_04304
   03400 DNA repair and recombination proteins [BR:vda03400]
    VDAG_04304
Enzymes [BR:vda01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     VDAG_04304
DNA replication proteins [BR:vda03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    VDAG_04304
DNA repair and recombination proteins [BR:vda03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecQ family DNA helicases
     VDAG_04304
    Bloom's syndrome complex (BTR)
     VDAG_04304
   FA (Fanconi anemia) pathway
     VDAG_04304
SSDB
Motif
Pfam: DEAD Helicase_C RecQ_Zn_bind RQC ResIII HRDC Polysacc_synt_3 MC4
Other DBs
NCBI-GeneID: 20705767
NCBI-ProteinID: XP_009649046
UniProt: G2X1Y0
Position
1
AA seq 1518 aa
MDLTGDDTIISPDSINFGDEVKIWNEEHGKRSEPLSHRGQKRKSMDVADMDDFNSDDEFP
DLYDILETPAPKSSKATKVTKITTPSLLETHDQAVRPSTNRIQKTYRQISDDGNPGTPRR
PMPLSHHDQYLGRTPSKALVLSSSPNTGEPVDSTPDACQVKGTPAPALVKKRRIIQDSDD
DEPNDELITPPSRHVSIAQQDHDVLRAIQSPTTDDELMALETPSRAELVQVAPITKMAAP
TLPAKQEASSRPISQSQSSGPLVGSQIPGDPDPAVLEWFLRTELVLESKTKSLETRITKN
SEAFGILLKQGGTKEDRQKVKSEKKVLLAQKEALKSVQAVAEQLKPLQDERQLLAVQLAE
AYDAGLDTDDDESRLDDISDSIKALEQTYLPLLSAAGIDADFMAEHERTQKPTVHFKDSV
ILNTQPSHPGAGQKVHSRNALPCTEVIQQTQFSSAPQYRQTSPPPFPRTSTRTPKDSQVS
YDRAPAGHILVEDDAEDFFDDIEESDLSAMTPSFSAVSAFKPSDGTSAKLSSRPDTFSDG
FDDDDAMVAMAEAHETNEMPSNDMLSRRPILAKTSGNAVTSSKPKAVPKKREAAVLKASI
PAELLKHRWSEDVTKALKDRFRMRGFRTNQLEAINATLAGKDAFVLMPTGGGKSLCYQLP
AVVTSGKTKGITVVVSPLLSLMQDQVDHLTALGIKAKAFSSAIQAPARREILEFMNSPYP
DHQFTMLYVSPEMLNASAQFERALANVYRNQKLARFVVDEAHCVSQWGHDFRPDYKDLFK
LRSNYPSVPIIALTATATTNVIVDIQHNLQIDKCQVFTQSFNRPNLTYAVERKEKGLIET
IAQLIQSKYDNQTGIIYVLSRKNTEDVATKLRDNYGISASHYHAAMKPEEKWNVQRRWQK
GSIKVVVATIAFGMGIDKPDVRFVIHHSLPKSLEGYYQETGRAGRDGKPSDCILYFGYGD
VFTLKKMINDGDGSEEQKERQRGMLNRMSTYCDDQKDCRRVTILRYFGEAFNVADCNKTC
DNCLHKGVFEERDFSEFAIAVIETIKAHKYLTINQCADILLGKKRPKTIDDNLDDNHGFV
KGRLAKHEIERLVDKLLAESALREENTFNKHAKIAIQYIYVGVNANKYISGRSKLMMSVK
VSNKDKESSAPKPRKRTKKDSADGGDKPMPGQSRLPPSTNVSSPATGKTTRRAQGKNVVL
DEESDFEERDADTHVNGYERDEFVVSDDESDDGFEPRPAARRRKVAVPLGPRISQEDRLR
ELEDWQQDLIENFVRDAKVLEEKLRNQQQLRKPLFSEAILREMAINRTTTLAKMRAISGI
DAERVTKFGSKFLPLIKSCESLYEQADEQDDAEGSALYAGQGADAITISDEDGDETEDLD
DEERDQPSKYFRGASEHDESEPEVPSPKAARAWESRFGATAGPRGGSYRGGGGRRGGFRA
GSRGGSRKASGSRKQSSEYTRRGSSSRGSGVTKRRASGSARGGGSAATSGASRSALISSY
AYRGGGKSGGSGIGLMPT
NT seq 4557 nt   +upstreamnt  +downstreamnt
atggatctcacaggggacgataccatcatctccccggattcaatcaactttggcgatgaa
gtcaagatttggaacgaagagcacggcaagaggtcggagccgctgtcacacaggggccag
aagaggaagagtatggatgttgccgacatggatgatttcaattcggatgatgagtttccc
gacctttacgacatactcgagactcctgctccgaagagcagcaaagcgaccaaggtcaca
aaaatcaccactccgagcttgctggagacacacgaccaagccgtgcgcccttcaacgaac
cgaattcagaaaacatatcgacaaattagtgacgatggcaatcctggcacgcccagacga
cccatgcctctttctcatcacgatcaatatctgggaagaacgccaagcaaagcgctcgtc
ctatcgtcctcgcccaacacaggtgagcctgtggactcaacgcctgatgcttgtcaggtt
aagggcacgccagcgcccgccttggtcaagaaacgccggattatccaggactcagacgac
gacgagcctaatgacgaattgatcacacccccgagtcgacatgtctctatcgctcagcaa
gatcatgatgtgttgagagctatacagtcgcctacgaccgatgatgagctgatggccctg
gaaacaccctctcgagctgagcttgttcaagtcgccccaattacgaaaatggcggcccca
actctgcctgcaaagcaggaggcatcatcaagaccaatatctcagtcgcagtcgtcgggg
cctctagttggttcgcagattccaggtgatcctgatcccgccgtcctagaatggtttctc
aggacggagttggtcttggagtcaaagacgaaaagcttagagacacgaatcaccaagaat
agtgaagcctttggcatacttctgaagcaaggcgggacaaaagaagaccgccagaaggta
aaaagcgagaagaaggtcctgcttgcacagaaagaagcgctcaaaagcgttcaagctgtc
gctgagcagcttaagccccttcaggacgagcgtcaattgctcgctgttcagctagccgaa
gcatacgatgctggcctcgataccgatgatgatgagagtcgtttggacgatatctccgac
agcatcaaggctctcgagcagacatatctaccgctcctttcagcagcgggtatcgatgcc
gactttatggctgaacatgagcgcacccaaaagccaaccgtgcatttcaaagattcggtc
attctcaacacacagccatcccacccaggcgctggtcaaaaagtacactcccgaaatgcg
ttaccatgcactgaagtcatccagcaaacccaattctcttctgcgccacaatacagacag
acatctcctcctccatttccacgaacatccacacggactcctaaagattcccaggtttcg
tatgatcgagcaccagctgggcacatccttgtagaagatgacgctgaagacttcttcgac
gacattgaagaatccgacttgagtgcaatgacgccatcattttcagctgtttcagcgttc
aagcctagtgatggaacttcagcgaaattgtcgtctaggcccgacacgtttagcgacggc
tttgacgatgatgatgccatggttgccatggcagaagcgcacgagacgaatgaaatgccg
tccaatgacatgctcagccggcgtccgattctcgccaaaacgtcaggaaatgcggtcact
tcatcaaaacccaaggctgtgccgaagaaacgggaggctgcagtcctgaaggcatcgatt
cctgccgagttactgaaacatcgttggtccgaggacgtgaccaaggccctcaaggacagg
ttcagaatgcgtggcttccggaccaaccagctagaagccatcaacgctacgctagctggt
aaagacgcattcgttctcatgccaactggcggaggtaaatccctgtgctaccaattgccg
gccgtggtcactagcgggaagacgaagggcatcactgttgtcgtttcgccactactcagt
ctgatgcaggaccaagtcgaccatctcacggcgcttggcatcaaggctaaggctttcagc
agtgccattcaggccccagctcgacgagagatattggaattcatgaacagcccgtatccc
gatcatcagttcacgatgctttacgtcagtcctgagatgctcaacgctagcgcacaattt
gagcgtgcacttgcgaacgtctatcggaaccagaaactggcgcgtttcgtcgtggacgag
gcacactgcgttagccagtggggtcatgacttccgacccgactacaaagacctgttcaag
ctgcgcagtaactatcccagcgtgcccatcattgccctgactgctactgctaccacgaat
gttatcgtggatatccagcacaatctgcagattgacaagtgccaagtctttacgcaaagt
tttaatcggccgaatctgacgtatgctgtcgagaggaaggagaaaggcctaatcgaaaca
attgctcaactgatccaaagcaagtatgataaccagacgggtatcatctacgtcttgtcg
cgcaagaacacagaggacgtggccacgaagcttcgcgacaattatggcatctctgcaagc
cattaccacgcggctatgaagcctgaggagaagtggaatgtccagagaagatggcaaaag
ggcagcatcaaggtagtggttgccactattgctttcggaatgggcattgacaagcctgac
gtgcgatttgtcattcatcactctcttcccaaaagtcttgaagggtactatcaagagacc
ggacgtgcgggcagagacggtaaaccgtccgattgtattctgtactttgggtacggcgat
gtcttcaccctgaagaagatgatcaatgacggtgacggcagcgaggaacaaaaggagcgg
cagcgaggcatgctgaaccgcatgtcgacgtactgtgatgatcagaaagactgtcgtcga
gttacaattctccgctactttggcgaagcattcaatgtcgcggactgtaacaagacttgc
gacaactgtcttcacaagggcgtgtttgaggagcgggatttcagcgagttcgccattgcc
gttattgagacgatcaaggcgcacaagtacctgactatcaatcagtgtgcggatatcctg
ctcggcaagaagcgtccaaagacgattgacgacaatctcgacgacaaccacggctttgtc
aaaggtcgcttggcaaagcatgagattgagagactagtggacaagctccttgccgaatct
gctctccgggaggagaacacatttaacaagcatgccaaaatagcgatacagtacatctat
gtgggcgtcaacgccaacaagtacatcagcggtcgcagcaagttgatgatgtcggtcaag
gtttccaataaggataaggaatcatcggcaccgaagccgcgcaagcgaacgaagaaagat
tcagcagatggtggagacaagcccatgcctggtcagtcgcggcttccgccatcgaccaac
gtttcctccccagccacgggcaaaactacacgaagagcacaggggaagaatgtggtgctc
gatgaagagagtgattttgaagaaagagatgccgacactcacgtcaacggctacgagagg
gatgaatttgtcgtttcagacgacgagtccgatgacggattcgagccaaggccggcggcc
aggagacgcaaagtcgctgtcccgctcggacctcgtatctcgcaggaggatcgcttgcgc
gaactcgaggactggcagcaggatctcatcgaaaactttgttcgagacgccaaggtgctg
gaagagaagctacgtaaccagcaacagctgcggaaaccgttattctcggaagctatactg
agggagatggccatcaaccgcacgacaacgttggccaagatgcgggcgatttccggcatt
gatgccgaacgcgtcactaagtttggcagcaagttcctgccgctcatcaagagctgcgag
tcactctacgagcaagcagacgagcaagacgacgccgagggatcggctttgtatgctggc
caaggcgctgacgccatcactatcagcgatgaagacggcgacgagacggaggatctcgat
gatgaggaacgggaccagccttcaaagtatttccgcggggcttcggagcacgatgaatcg
gagcctgaggttccttcccccaaggcagcacgtgcgtgggagtcgagatttggggccacc
gcaggccctcgagggggctcgtaccgcggaggcggtgggcgtcgcggtggctttcgagcg
ggcagccgtggaggcagcaggaaggccagcggttcacggaaacaatcgtccgaatacacg
aggcgaggcagcagcagcagaggcagcggcgtgacgaagcgcagggcctcgggcagcgcg
cgaggcgggggttctgctgcgacatcgggcgcctcccggtctgctctcatatcaagctat
gcctataggggtggcggcaagtcggggggcagtggtattgggctgatgccgacctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (22)   

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