KEGG   Verticillium dahliae: VDAG_08833
Entry
VDAG_08833        CDS       T03450                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
vda  Verticillium dahliae
Pathway
vda03013  Nucleocytoplasmic transport
vda03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vda00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VDAG_08833
  09122 Translation
   03013 Nucleocytoplasmic transport
    VDAG_08833
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vda03019]
    VDAG_08833
   03041 Spliceosome [BR:vda03041]
    VDAG_08833
Messenger RNA biogenesis [BR:vda03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     VDAG_08833
Spliceosome [BR:vda03041]
 Complex C
  Other components
   EJC/TREX
    VDAG_08833
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    VDAG_08833
SSDB
Motif
Pfam: WD40 ANAPC4_WD40
Other DBs
NCBI-GeneID: 20710296
NCBI-ProteinID: XP_009649445
UniProt: G2XFA1
Position
1
AA seq 339 aa
MAPLSRPKTSLPRERFTTYLKDIKIQTYQDPSFGSSSRNSGSSRSIWSISWNPTGSLIAT
GADRILRVWNPEKPVARFSTELKGHTAAIAKVAFNPAKDAELCSISFDGVAKFWDVRSKT
CTNEVKGLGEAFTLAWAPDGETLVVGNKADTLFLLSPTQTAPLSTHTQDVQTNQVSFCWS
GEKVFLTTGEGRVRILSYPDFQPLLHREGPDGAIEFTLDGHASQCLSAEMQPTARYLATG
GYDSIIALWDTTNWICQNTVTTSVGPVRSISFTFDGSYCVGGSEQGAGLDVFHTETGDTI
HTIKTSDPSPVVAWAPTRYYLAFIDQNALRIAGIDTERK
NT seq 1020 nt   +upstreamnt  +downstreamnt
atggcacccctctctcgcccgaagacaagtctcccaagggaacgattcaccacgtacttg
aaagatattaagatacaaacgtatcaggaccccagcttcggctccagttctcgcaacagc
ggctcatcacgcagcatatggtccatttcttggaacccaactggttccctcattgccacg
ggagcggataggatacttcgtgtctggaatcctgaaaagcccgttgcacgcttctcgact
gagctcaaggggcacacagctgcgattgccaaggttgccttcaatcctgccaaggatgca
gagctctgcagcatcagttttgatggcgtggccaaattctgggacgttcgaagcaaaacc
tgcaccaacgaagtcaagggcctcggtgaagccttcacgctggcatgggccccagatggc
gagaccctcgtggtaggcaacaaagcggacacgctctttctactgtctcctacccaaacg
gcacccttgtccactcacacgcaagatgtgcagacaaaccaggtatcgttctgttggagt
ggagagaaggtcttcctgaccactggcgagggtcgtgtccgtattctttcgtatcccgac
tttcagccactacttcaccgcgagggcccagacggggccatcgagttcacgctggatggc
cacgcttcacaatgcctctcggccgagatgcagccgactgctcgttatctagcgacaggt
gggtatgattccatcattgcgctctgggacacgacaaactggatctgccagaacacggtc
accacgtctgtaggccctgtccgaagcatcagcttcacgtttgacggcagttactgtgtg
ggaggaagcgaacagggtgctggcctcgatgttttccacacggagacgggggatactatc
cacaccatcaagacgagcgatcccagcccagtggtggcgtgggcgcctacgcgctattac
ctcgccttcatagaccagaatgcccttcgcatcgctggtatcgatacagaacggaaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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