KEGG T00236: VF

Aliivibrio fischeri ES114: VF_0593

Entry

VF_0593           CDS       T00236

Symbol

ygdE

Name

(GenBank) predicted methyltransferase

K06968

23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]

Organism

vfi Aliivibrio fischeri ES114

Brite

KEGG Orthology (KO) [BR:vfi00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:vfi03009]
    VF_0593 (ygdE)
Enzymes [BR:vfi01000]
2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.186  23S rRNA (cytidine2498-2'-O)-methyltransferase
     VF_0593 (ygdE)
Ribosome biogenesis [BR:vfi03009]
Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    VF_0593 (ygdE)

SSDB

Motif

Pfam:

RLMM_N RlmM_FDX FtsJ Spt5-NGN GP67

Other DBs

NCBI-ProteinID:

AAW85088

UniProt:

Q5E7A8

Position

I:650583..651662

AA seq 359 aa
MFYCRSGFEKECAGEIQDKATQLEVFGFPRLKNNTGYVLFECYQEGDADRLIREIKFNEL
IFARQMFAVAAEVSDLPKDDRISPILDALSDVDGVPCCGDIRIETPDTNEAKELLKFCRK
FTVPMRQALRGKKMLTERDSNRIPVLHICFIAPGHCYVGYSYTNNNSQFFMGIPRLKFPA
DAPSRSTLKLEEAFHVFIPKEEWDDRLASGMWGVDLGACPGGWTYQLVKRSMFVHAIDNG
MMAQSLMDTGQVKHHMVDGFKFEPPRKNVTWLICDMVEKPARVAHLMGEWLIKGWAKEAL
FNLKLPMKGRYDEVLQDIENLKDFLKKNGFQYKLQAKHLYHDREEITVHIQAISNISPH

NT seq 1080 nt +upstreamnt +downstreamnt
atgttctattgtcgctctggttttgaaaaagagtgtgcaggtgagatccaagataaagcc
actcaactagaagtgtttggttttcctcgcctaaaaaataatacaggctatgtgctattt
gaatgctatcaggaaggcgatgcagaccgtttaatccgtgagattaaatttaatgagcta
atttttgctcgtcaaatgtttgcggttgcagctgaagttagtgatctacctaaagatgac
cgtatttcgccgattctagatgcattatctgatgttgatggtgtgccttgttgtggtgat
attcgtattgaaacgccagatacgaatgaagcaaaagaactattaaaattctgccgtaag
tttacagttccaatgcgtcaggctttacgtggtaaaaaaatgctgacagaaagagattca
aaccgaatccctgttttgcatatttgtttcattgctccgggtcattgttatgttgggtac
tcttacacaaacaataactctcaattcttcatgggtattcctcgtttgaaattcccagca
gatgcaccaagtcgttctacattgaaattggaagaagcgtttcacgtatttattccaaaa
gaagagtgggatgatcgtttagcatcaggcatgtggggggttgatttaggtgcgtgtcct
ggtggctggacttatcaattggttaagcgttctatgtttgttcatgcgattgataatggc
atgatggctcaaagcttaatggatacaggccaagtgaaacaccacatggttgatggtttt
aaatttgagccaccaagaaagaacgtaacatggttaatttgtgacatggttgagaaacca
gctcgtgttgcacaccttatgggtgaatggctaattaaaggttgggcaaaagaagcgtta
tttaaccttaaattaccaatgaaaggtcgttacgatgaggttcttcaagatattgaaaac
ctaaaagatttcttgaagaaaaacggtttccaatacaagcttcaagctaagcatttgtat
catgaccgtgaagaaatcactgttcatatccaagcgatttcaaacatttctccacattaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (5)   
   Pfam (5)   
All databases (32)   

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