KEGG T00236: VF

Vibrio fischeri ES114: VF_1450

Entry

VF_1450 CDS T00236

Definition

DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

vfi Vibrio fischeri ES114

Pathway

vfi03410	Base excision repair
vfi03420	Nucleotide excision repair
vfi03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:vfi03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:vfi03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:vfi03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining

SSDB

Motif

Pfam:

DNA_ligase_OB_2 DNA_ligase_A_M

Other DBs

NCBI-GI:

59712057

NCBI-GeneID:

3278749

UniProt:

Q5E4V1

Position

I:complement(1601052..1601909)

AA seq 285 aa
MMKIKLLAALVALGLTPLPTYSHDEPNTASIDVVLATQYEKGMDIEGYWASEKLDGIRAL
WTGEKLITRTGHTIYAPDWFTGPLPDHKIDGELWAGRGGFQQVAKTVLDSQPNDELWKKI
RFMAFDLPSSAGMFPKRYYELSTIVKKLDHPHLKLVEHYPISNEDSLLEALDDISARNGE
GVMLRKVSEVYRPGRSDDLIKVKKHQDNEAIVIGYTDGKGKFRGMVGAMILRMPNGKEFK
VGSGLSIEVRENPPKLGSTVTYRYNGYTDNGIPRFARYVAVRNNY

NT seq 858 nt +upstreamnt +downstreamnt
atgatgaaaataaaattacttgcagccttggttgcgcttgggttaaccccactccccaca
tattcacatgatgaaccaaatactgcatcaatagatgtggttcttgctactcaatatgaa
aaaggaatggatattgaagggtattgggcaagtgagaagttagatggtattcgagcatta
tggacaggagaaaagttaataacacgaacaggtcacacgatatatgcaccagattggttt
actggcccattacctgatcataagattgatggagagttatgggctggaagaggtggattt
caacaagttgcaaaaacagtgttagacagtcaacctaatgatgaattatggaaaaaaatt
cgcttcatggcattcgatttacctagctctgccggtatgtttcccaaacgatattatgag
ctatcaaccatagttaaaaagctcgatcacccgcacttaaaattggttgaacattatcct
atcagtaatgaagactctctattagaagcattagatgatatctctgcacgtaatggtgaa
ggggtgatgctaagaaaggtcagtgaagtttatagacccggacgcagtgacgatttaatt
aaagtgaaaaaacatcaagacaatgaagccattgtgatcggctataccgatgggaaagga
aagtttcgcggtatggtgggcgcaatgattttacgtatgccaaatggaaaagaatttaaa
gttggtagcggtttgagtattgaagtaagagaaaacccacctaaattaggctctacagtg
acttatcgttataacggttatacggataacggaatcccaagatttgcacgatacgttgca
gtgagaaataattattag

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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