KEGG T00754: VFMJ11

Vibrio fischeri MJ11: VFMJ11_0597

Entry

VFMJ11_0597 CDS T00754

Gene name

recD

Definition

exodeoxyribonuclease V subunit alpha (EC:3.1.11.5)

Orthology

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

vfm Vibrio fischeri MJ11

Pathway

vfm03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:vfm03440]

SSDB

Motif

Pfam:

AAA_30 UvrD_C_2 AAA_19 Helicase_RecD AAA_11 Viral_helicase1 AAA_22 UvrD-helicase DUF2075 AAA_28 T2SE AAA_16 AAA_25 FtsK_SpoIIIE PhoH TrwB_AAD_bind NTPase_1 AAA_18 AAA RNA_helicase AAA_17

Other DBs

NCBI-GI:

197335925

NCBI-GeneID:

6807769

UniProt:

B5FAS6

Position

I:628845..630863

AA seq 672 aa
MLKQLQHLMDHGVLRPLDLQFAKFIAQQEKNSDSNLLMLLSAITSHELGRGHVCIDIEQI
EQGELFTLPAKYRDALLELVPERSAWAQQLINASTVSNGTEATPLAFDGTRLYLQRYWAF
EQRVSNRITKAAQSVAVNPLLSNTLNELFSRQYHFLFSALKKLENNNQVSRQQLVCDMLD
VVQSDDLDWQAIDTVLLAATKSSELETLDQLIPNNHCVNWQKVAAAVALTRRFSVISGGP
GTGKTTTVTKLLASLVTQAQQDNKNIAIKLVAPTGKAAARLTESIGQAVQSIGLAPEVKE
AIPTDASTLHRLLGYIPNQVDFRHNKSNPLHLDVLVVDEASMVDLPMMARLLDAVPEHAR
VILLGDKDQLASVEAGAVLGDICQFTKMGYSQNQAQQLSQLTGFNLLAQSHNNAVADSLC
MLQKSYRFDARSGIGQLAKAINEGSKFKVEAVWDKGFSDIRFHDLSNDSYNAMITMMVNG
YRSYLGHIHAGDKPEIVLKAFSQIQLLCAMREGDFGVVGLNQRIEKALKKSDLIPHGDEI
WYSGRPVMVTQNDYGVGLYNGDIGIAMPDPIDQRLRVYFDMPDGSIRGVLPSQLPEHETV
YAMTIHKSQGSEFEHTVLALPAEFSPILTRELIYTGVTRAKKKLDLFATEKVVARGVMIK
TQRNSGLVSLMS

NT seq 2019 nt +upstreamnt +downstreamnt
atgcttaagcaattacaacacttaatggatcatggcgtgctacgccctttggatcttcaa
tttgccaagtttatcgctcagcaagaaaaaaacagtgatagtaatttacttatgctgcta
tcagccattacgagtcatgagctaggtcgtggtcatgtatgtattgatattgagcagata
gagcaaggggagctctttactcttcccgcaaaatatcgtgatgcgttattagagttagtc
ccagaaagaagcgcttgggcacaacaattaattaatgcatcaaccgtctcaaatggcaca
gaggcaactcctttagcttttgatggtactcgcttgtatttacaacgctactgggcattt
gagcaacgtgtgtctaaccgtattactaaagctgctcaaagtgttgcagtaaaccctctg
ctatcgaatacattgaatgagttgttttctcgtcagtatcattttttattttcagcattg
aaaaagttggagaataacaatcaagtttctcgccaacaattagtgtgcgatatgcttgat
gttgttcaatcagatgatcttgattggcaggcgattgatacggttttattagccgcgacc
aaatcttcagaattagaaacgttagaccaattaattccaaataaccactgtgttaattgg
caaaaagtcgcggcagctgtggcgttaactcgtcgattctccgtaatttctggtggtcca
ggtacgggtaaaacaaccacagtaaccaagcttttggcttccttagtgacacaagctcag
caggataataaaaacatagcgattaaactggttgcgccaactggtaaagccgcggcgcgt
ttgactgaatctattggtcaggcagtacaatccattggtttagcacctgaagtgaaagaa
gcgatcccaacggatgccagtacgctacatcgcttacttggttatattcccaatcaagtg
gattttcgccataacaaatccaatccgttacaccttgatgtattggtggtggatgaagcg
tctatggtcgatttgcctatgatggctcgattactcgatgcggtacctgaacacgctcgt
gttattttattgggcgataaagatcaactcgcttcggttgaagcgggagcggtgttaggt
gatatttgtcagtttactaaaatgggttatagccagaaccaagctcagcaattatctcaa
ctaactggctttaatctactggctcaatcacataataatgcggttgcagatagcttatgt
atgctgcaaaagagttaccgttttgatgcgcgttcaggcataggccagcttgccaaagcc
attaatgaaggcagtaaatttaaagtagaagccgtgtgggataaagggttttcagatatt
cgttttcatgatttaagtaatgatagctataacgcaatgattactatgatggtcaatggt
tatcgcagttacttaggtcatattcacgcaggcgataaacctgaaatcgtactgaaagca
tttagccaaattcaattattatgtgcgatgcgtgaaggggattttggtgtagttggatta
aatcaacgtattgaaaaagcgttgaaaaagtctgatttaatccctcatggtgatgaaatt
tggtattcaggtcgccctgttatggtgacgcaaaatgattatggtgtgggtttgtataat
ggtgatattggtattgctatgccagatcctattgatcagcgtttgcgtgtctattttgat
atgccagatggctctattcgtggtgtgctaccaagtcaattaccagagcatgaaacggtt
tatgcaatgacaattcataagtctcagggctctgagtttgagcatacagtattggcattg
cctgcagagtttagcccaattttaacccgtgagctgatttatacgggggtcactcgagcg
aagaaaaaactcgatttatttgcgacagaaaaagtggtggctagaggggttatgattaaa
actcagagaaacagtgggttagtatcactaatgagttaa

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (21)   
   Pfam (21)   
All databases (30)   

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