KEGG   Aliivibrio fischeri MJ11: VFMJ11_1833
Entry
VFMJ11_1833       CDS       T00754                                 
Symbol
rnd
Name
(GenBank) ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
vfm  Aliivibrio fischeri MJ11
Brite
KEGG Orthology (KO) [BR:vfm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:vfm03016]
    VFMJ11_1833 (rnd)
Enzymes [BR:vfm01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     VFMJ11_1833 (rnd)
Transfer RNA biogenesis [BR:vfm03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    VFMJ11_1833 (rnd)
SSDB
Motif
Pfam: DNA_pol_A_exo1 RNAseD_HRDC_C HRDC
Other DBs
NCBI-ProteinID: ACH66871
UniProt: B5FFP8
Position
I:complement(1946407..1947528)
AA seq 373 aa
MEFEIVTQSQRLAEICQQASTKPFLMLDTEFVRTRTLYARLGLIQMFDGETLALVDPVEI
DDLTPLWDLLKNESVTKVLHACGEDLEVFQHYAGCMPTPMIDTQIMAAFLGYGLSTGFAK
LVSDYLGIELDKGEARTDWMARPLSDKQLHYAAADVHYLLPLFEKLQAELSQTQWEDAAY
QESTLAVKKREKQPDAEKAYLDIKNAWQLNPKQLAILKMAAKWRLEEARKRDLAVNFVVK
ELSLWKLARFGLRSKEQMLKEEFDPREVQRHGGKLLRFTYLADDLNPNEYPEQVTRLMDY
PGYKQIFKLLKDEVKIASDKSGLMPEFLASKKQLNQLLSWKWKKNAAPELKPDVLKGWRG
ELLEARFMSVIEK
NT seq 1122 nt   +upstreamnt  +downstreamnt
gtggaatttgaaattgttacccagagccagcgtttagctgagatctgtcagcaggcaagc
acgaaaccatttttaatgttggataccgagtttgtaagaacacgaacgttatatgcacgt
ttaggtttaattcaaatgtttgatggtgagacattagcgcttgttgatccggttgagatt
gatgatttaacgcctctttgggatttattgaaaaacgaatcagtgacaaaagtacttcat
gcatgtggtgaagatttagaggtattccaacattacgctggttgtatgccaacgccgatg
attgatacacaaatcatggcggcatttttaggttatggactttctacgggattcgctaag
ctagtttctgactatttaggtattgaattagataaaggcgaagcaagaacggattggatg
gcacgtccattatcagacaaacaacttcactatgcagcggcagatgtgcattatttattg
ccattatttgaaaagcttcaagctgagttatctcaaactcaatgggaagatgcggcttat
caggaatcaacacttgcagttaaaaaacgtgaaaagcaacctgatgcagagaaggcctat
ttagatattaaaaatgcgtggcagcttaatcctaaacagttagctattttaaaaatggct
gcaaagtggcgtttagaagaagcaagaaagcgtgatttagcggttaactttgttgtaaaa
gagctgagtctttggaaactggctcgctttggacttcgtagtaaagagcaaatgcttaaa
gaagagtttgatccaagagaagtccaacgtcatggtggtaaattattacgttttacttat
ttagccgatgatttaaatccaaacgaatacccagagcaagtaacacgattaatggattac
cctggctataagcaaatctttaaattattaaaagatgaagtgaaaatcgcttcggataag
tcaggtttaatgcctgagtttttagcatcgaaaaaacagctaaatcaattattatcttgg
aaatggaaaaagaacgcagcaccagagctaaaacctgatgtattaaaagggtggcgtggt
gaactattagaagcgcgttttatgtctgtgatagagaaataa

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