KEGG   Vibrio furnissii: vfu_A00038
Entry
vfu_A00038        CDS       T01680                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
vfu  Vibrio furnissii
Pathway
vfu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:vfu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    vfu_A00038
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vfu03021]
    vfu_A00038
   03400 DNA repair and recombination proteins [BR:vfu03400]
    vfu_A00038
Enzymes [BR:vfu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     vfu_A00038
Transcription machinery [BR:vfu03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     vfu_A00038
DNA repair and recombination proteins [BR:vfu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      vfu_A00038
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 DUF6155
Other DBs
NCBI-ProteinID: ADT85278
Position
1:complement(39916..43944)
AA seq 1342 aa
MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQDPEGQYGLEAAFRSVFPIQ
SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTTEEILDIFFEKINFEVKDQTLMME
LVPERLRGETASFDIEADGKLYVEKGRRVTARHIRQLEKDGVTFIEVPVEYIVGKVSSKD
YINEATGEIIVAANQEISLESLANLSQAGYKKLEVLFTNDLDHGPFMSETLRVDSTTDRI
SALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIERADAEEQGTL
DETDIVEVMKKLIAIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVVDGVVT
DEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVNYMDVATNQV
VSIAASLIPFLEHDDANRALMGANMQRQAVPTLKAEKPFVGTGIERNVAVDSGVTAVAKR
GGMIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEPVARG
DVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCVA
RDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDL
TEEFQILEGGLLARVRSLLITGGYSEAKLDAIDRKKWLEQTLENDELQTQLEQMAEQYDE
LRAEFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMIKEQQELAK
LREFLQKVYDLGETRQQVDIAALSDDEVRTLAQNLRSGLPIATPVFDGANEASIKALLKL
GDLPESGQLTLFDGRTGDAFERSVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHAMEPGMPE
SFNVLLKEIRSLGINIELEDEE
NT seq 4029 nt   +upstreamnt  +downstreamnt
atggtttactcttataccgagaaaaagcgcatccgtaaggactttggtactcgtccacaa
gtgttggacattccatacctgctatcgatccagctcgattcgttcgaaaaattcatcgaa
caggatcctgagggacaatacggtcttgaagccgcttttcgttctgtatttccaatccag
agctacaacggcaattcagagctgcaatacgttagctaccgtcttggtgagccagttttt
gacgttaaagaatgtcaaatccgtggtgtaacttattcaaaaccgctacgcgtgaaactg
cgcctagtgatctttgataaagacgcgccagcaggtactgtcaaagacattaaagaacaa
gaagtctacatgggtgaaattccactcatgacagacaatggtacctttgtaatcaatggt
accgagagggttatcgtatcccagctgcacagaagccctggcgtattcttcgacagcgat
aagggtaagacccactcttcaggcaaagtgctttacaacgcacgcatcatcccgtaccgc
ggttcttggttggatttcgaattcgaccctaaagataacctgtacgtgcgtattgaccgt
cgtcgtaagctccctgcatctattatcctgcgtgcgctgggtaagacgactgaagaaatc
ctcgacatcttcttcgaaaaaattaacttcgaagtgaaagaccaaactctgatgatggag
ttggtgcctgagcgtctacgcggtgaaactgcgtctttcgatatcgaagcagatggcaag
ctgtatgttgagaaaggtcgtcgtgtaacggctcgtcacattcgtcaacttgaaaaagat
ggcgtgacctttatcgaagtaccggttgagtacatcgtaggtaaagtttcttctaaagat
tacatcaatgaagcaactggcgagatcatcgttgcagcgaaccaggaaattagccttgaa
tcgctggcgaacctgtcacaagcaggctacaaaaaactagaagttctgtttacgaacgat
ctagaccacggtccgttcatgtctgagaccttgcgtgtcgacagcacaacagaccgtatt
tcggcgttggtagaaatctaccgaatgatgcgccctggcgagccgccaacaaaagaagcg
gcagaagccctatttgaaagcctattcttctctgaagaacgctacgatctgtctactgtc
ggtcgtatgaagttcaacagctctatcgagcgtgcagacgctgaagagcaaggcactctt
gacgaaacagacatcgtcgaagtgatgaagaaactgatcgcgatccgtaacggtaaaggc
gaagtggacgatatcgaccaccttggcaaccgtcgtatccgttctgttggcgaaatggca
gagaaccaattccgtgttggtcttgtacgtgttgaacgcgcagtgaaagaacgcctaagt
cttggcgatctggacaacgtgatgccacaagatctgatcaacgcgaaaccgatttctgct
gctgttaaagaattcttcggttcttcacagctgtctcagtttatggaccagaacaacccg
ttgtcagaagttacgcacaaacgtcgtatctctgcattgggccctggcggtctgactcgt
gagcgtgctggctttgaagtacgtgacgtacacgtaacccactacggtcgtctatgtcct
atcgaaacgcctgaaggtccgaacatcggtctgatcaactcgctgtctgcgtttgcacgc
tgcaacgagtacggtttccttgaaaccccataccgtcgcgttgtagatggcgttgtcacg
gatgaagtggattacctgtcagctattgaagaaggtcaattcgttatcgcacaggcgaac
gcgaaactgactgaagaaggtggctttgctgatgagctggttacagcacgtcaaaaaggt
gaatctggtcttcacccacgtgaacacgtgaactacatggacgttgcaacgaaccaagtt
gtatcgatcgcagcatcgctgattccattcttggaacacgatgacgcgaaccgtgcattg
atgggtgcgaacatgcaacgtcaagcagtaccaacgctgaaagctgagaagcctttcgtt
ggtaccggtattgaacgtaacgtagcggtcgactcaggcgtaactgcagtcgcgaaacgc
ggcggtatgattcagtctgttgacgcatcacgtatcgtggttaaggttaatgaagaagag
ttgattcctggcgaagcgggcatcgatatctacaacctgactaaatacacccgttctaac
cagaacacttgtatcaaccagcgtccatgtgtgatgccgggtgaacctgtggctcgcggt
gacgtgctggctgacggtccatcaactgaccttggtgaactggcgcttggccaaaacatg
cgtatcgcgttcatgccttggaatggttacaacttcgaagactcgatcctagtttctgaa
cgtgttgttcaagatgaccgtttcacgactatccacattcaagaactgtcttgtgtggcg
cgtgatactaagctgggtgcagaagagatcactgcggatattccaaacgtcggtgaagct
gcgctgtctaagctggatgagtcaggtatcgtttacatcggtgctgaagtgaagggtggc
gacatcctggttggtaaagtaacgccgaaaggcgaaacccaactgactcctgaagagaag
ctgctacgcgctatcttcggtgagaaagcatcagacgttaaagatacttctctgcgtgta
cctaactctgttgcgggtacggttatcgacgttcaagtcttcactcgcgatggcgtagag
aaagacaaacgtgcgcttgaaatcgaacagatgcagctgaaagaagcgaagaaagacttg
accgaagaattccagattctggaaggcggtctgcttgctcgtgttcgttctctgctgatc
actggcggttacagcgaagcgaaactggatgctatcgatcgtaagaaatggctagaacag
acgctagaaaacgacgaactgcaaactcagctagagcaaatggctgaacagtacgacgaa
ctgagagctgaattcgataagaaattcgaaaccaagcgtcgcaagatcacccaaggtgat
gaccttgcacctggcgttctgaagatcgtgaaagtgtacttggcagtgaaacgtcgcatc
caaccgggtgataagatggcgggtcgtcacggtaacaagggtgtaatctctaagatcaac
cctgttgaagacatgccatacgatgagaaaggccaaccggtcgacatcgtactgaaccca
ctgggtgtaccgtctcgtatgaacatcggtcagatcctagaagttcacttaggtctggct
gcgaaaggtatcggtgacaagatcaaccagatgatcaaggaacaacaagagctggctaag
ctacgtgagttcctacagaaagtttacgatctgggcgaaactcgtcaacaagtcgatatt
gcggcgctgtctgatgatgaagtacgtacactggcacaaaacctgcgttcaggtctgcca
attgcgacgccagtctttgatggtgcgaacgaagcgtcaatcaaagcgctgctgaaactg
ggtgatctgccagaatctggtcagttgactctgtttgatggccgtactggtgatgcgttt
gagcgttctgtcactgttggttacatgtacatgctgaaactgaaccacttggttgacgac
aagatgcacgctcgttcaacgggttcttacagcctagtaactcagcaaccacttggtggt
aaagctcagttcggtggtcagcgtttcggtgagatggaagtatgggcactggaagcatac
ggtgcagcttacaccctacaagaaatgctaactgttaagtcggatgacgttaacggccgt
acgaagatgtacaaaaacatcgtcgacggaaaccacgcgatggaacctggtatgccagaa
tcgttcaacgtactgttgaaagagattcgctcgctaggtatcaacatcgagctagaagac
gaagagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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