KEGG   Vibrio gazogenes: BSQ33_16915
Entry
BSQ33_16915       CDS       T04933                                 
Name
(GenBank) ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
vga  Vibrio gazogenes
Pathway
vga03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vga00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BSQ33_16915
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vga03019]
    BSQ33_16915
   03009 Ribosome biogenesis [BR:vga03009]
    BSQ33_16915
Enzymes [BR:vga01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     BSQ33_16915
Messenger RNA biogenesis [BR:vga03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BSQ33_16915
Ribosome biogenesis [BR:vga03009]
 Prokaryotic type
  rRNA helicases
   BSQ33_16915
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 WYL HTH_60
Other DBs
NCBI-ProteinID: ASA57444
UniProt: A0A1Z2SJT1
Position
2:265011..266855
AA seq 614 aa
MQENVIQFKELALKNEILAALDNMGFVSPTPIQAAAIPFLLEGRDALGKAQTGTGKTAAF
SLPLLNKLIMDQRKPQAIVMAPTRELAIQVAAEIKTLGQQIAGLKVLEIYGGASIVDQMR
ALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQSPES
AQRVLFSATMPPMVKNIVDRYLRDPARVDVAGSNQTVAKVEQQFWVVKGVEKDEAMVRIL
ETEETDASIVFVRTRQDTERLADWLSSRGFKATALHGDIPQSLRERTVEHIKKGVTDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTRSSMEEIQLPHRDKVAQARLVQLSQELETEKEHKALEKFSELIESLRDSLDIDTTT
LAAMLLKRQQGKRPLFYVGEDPMIAEIEREKSRRRERRDGGNDGRRSYGQGNQDWDTYQL
QVGREQGVQVKDIVGALANELGLGKNSIGAIKLAQGHTFVQLPKSMSSDVTRKLRKLRIR
QKDVGAVVCDFDDFRESRGRREGGRPNRDSRGEGRGFRGEGRREGERRFDRNRGGDHRGA
HRGERGHARRSTEA
NT seq 1845 nt   +upstreamnt  +downstreamnt
atgcaagaaaatgtgattcaattcaaagaattagcgctcaaaaacgaaatcctcgccgct
ctggacaatatgggcttcgtttctcctacacccattcaggctgctgccattccatttttg
ttggaaggccgtgatgctttaggtaaagcacaaaccggtaccggaaaaactgcagcattc
tctctacctctgctcaataaactgattatggatcagcgtaagcctcaggccattgttatg
gcgccgacgcgtgagctggcaattcaggttgctgcagaaatcaaaacgttaggtcaacaa
attgcgggcctgaaagtattagaaatttatggtggtgcatcgatcgttgatcagatgcgt
gcactaaaatcgggtgctcatatcgttgtgggtacaccaggacgggttaaagatttaatc
acccgtgatcgtctccatttagatgaatgtcatacctttattctcgatgaagctgatgaa
atgctgaaaatgggttttgtcgatgatgtgacctggattatggaacaatcgcctgaaagt
gctcagcgtgttttgttctcagcgacaatgccgccaatggtcaaaaacattgtggaccgt
tatctgcgtgatccggcccgcgttgatgtggcaggttcaaaccagactgttgcaaaagta
gagcagcaattctgggttgtgaaaggtgtcgaaaaagacgaagccatggttcggatactt
gagacggaagaaacggatgcatcaattgtcttcgtacgtacccgtcaagacaccgagcgt
ctggctgactggctttcttcccgtggatttaaagccacagcactgcatggcgatatcccg
cagtctttacgtgaaagaacagttgagcacatcaaaaaaggtgtgactgacattttggtt
gcaacggatgttgttgctcgtggactggatgtgcctcgaattacgcatgtattcaactac
gatattccatttgacgtagaatcttatattcaccgtattggtcgtactggccgtgccgga
cgaaaaggaaaagcgatcctgttggttcgtactaaccaaatccgcatgttgcgtacgatt
gaacgagtgacgcgttcttcgatggaagaaattcagttgccgcatcgtgacaaagttgct
caggcacgcttggttcaactgagccaagaacttgaaactgaaaaagaacataaagcattg
gaaaaattttccgagctgattgaaagcctcagagattctttagacatcgataccacgaca
ctggcagcgatgttactgaagcgtcaacaaggcaaacgtccattattctacgtcggtgaa
gatccaatgattgctgagatcgagcgtgagaaatcacgtcgtcgtgagcgtcgtgacggt
ggtaatgatggtcgtcggagttatggtcagggcaatcaggattgggatacttaccaatta
caagtcggtcgtgaacaaggtgtgcaggttaaagatatcgttggtgcactggcaaacgaa
ctgggtcttggtaaaaactcaattggtgccattaaactggcacaaggacatacattcgtt
caattgccgaaaagcatgtcttctgatgtgactcgtaagttgcgcaaacttcggattcgt
cagaaagatgtcggtgcggttgtgtgtgactttgatgatttccgtgaatctcgcggtcgt
cgtgaaggtggtcgtccaaaccgtgacagccgtggtgaaggccgtggtttccgtggcgaa
ggccgtcgtgagggcgaacgtcgctttgatcgtaatcgtggtggagatcatcgcggtgct
catcgtggtgaacgtggtcacgctcgacgtagtactgaagcataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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