KEGG   Vulgatibacter incomptus: AKJ08_2070
Entry
AKJ08_2070        CDS       T04035                                 
Name
(GenBank) DNA-directed RNA polymerase beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
vin  Vulgatibacter incomptus
Pathway
vin03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:vin00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AKJ08_2070
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vin03021]
    AKJ08_2070
   03400 DNA repair and recombination proteins [BR:vin03400]
    AKJ08_2070
Enzymes [BR:vin01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AKJ08_2070
Transcription machinery [BR:vin03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AKJ08_2070
DNA repair and recombination proteins [BR:vin03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AKJ08_2070
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 RnfC_N
Other DBs
NCBI-ProteinID: AKU91683
UniProt: A0A0K1PDR4
Position
complement(2452405..2456628)
AA seq 1407 aa
MAPTIQNNFRIRKSFAKIQKIIDIPNLIDIQKQSYDQFLQVDVPAEKREDTGLQGVFKSV
FPIKDFNETSSLEFVSYHLEKAKYDVDECHQRGMTYSAPIKVVVRLVVWDKDETTGAQSI
RDVKEQEVYFGEIPLMTVNGTFIINGTERVVVSQLHRSPGAFFDHDKGKSHSSGKLLYNA
RIIPYRGSWLDFEFDHKDILYVRIDRRRKLPVTVLLRALGGVPDTAKRKPIEWNGTAEEM
LNYFYDTETIFLGSKKDEFSKSVELELLKGQRATHDIVNPKTGEVIVKKNRKFTSGAIKK
IEAAGIDRLPLDPDELWTKVAAHDVVDESTGEVLLEVNDQVSSEAVEELRARGVNEFKVL
FIDNLNVGPHLRNTLMLDKVSSPEEAIMEIYKRLRPGDPPTPETATNLFLNLFFNSERYD
LSRVGRLKLNYRLHDRLPEEEREALDTPVLTKRDVLEAVRVLVDLKNGHGNIDDIDHLGN
RRVRAVGELLENQYRIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQ
LSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIG
LIASLSTFARVNEYGFVETPYRRCEDGKASAEVTFYSALEEEKHTIAQANSLLADDGSFS
EETVSCRKGRGEFVNARPEDVSLMDVSPNQLVSVAASLIPFLENDDANRALMGSNMQRQA
VPLLRTHAPLVGTGIEGTVARDSGVCAVAKRDGIVESVDAGRIVVKADVPASVTDVGSEV
DIYNLIKYTRSNQNTCINQKPIVRKGDRVRKGDVLADGPSTETGELALGQNVVVAFMPWQ
GYNFEDSILLSERISKEDFFTSIHIEEFECVARDTKLGKEEITRDIPNVGEEAMKDLDEA
GMIRIGAEVQPGDVLVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVVGTV
INAKVFSRKGVDKDERAKEIEAAEEAKLLKDQNDEIKILRDSAYAKIARMLGGKKTSAKL
VDDKGQTLLEKGTELSASVLAGVPQKYWPEIVTDGTEDLVRKVVASFEEQREVIKLVFGE
KISRLKKGDELPPGVIKMVKIYVAIKRKLSVGDKMAGRHGNKGVVSRILPEEDMPYLVDG
TPVDIVLNPLGVPSRMNIGQIMETHLGWAARGMGLKLAEMAEKAGGAAVRKELKATYPGK
ELAAFLDELPDDEVIKLGRRLKNGIHVASPVFDGGVETEIVDLLKQGGLKETGQSILFDG
RTGEPFDQDVTVGVMYMLKLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEV
WAMEAYGAAYSLQEFLTVKSDDVVGRTRMYEAIVKGDNVLESGLPESFNVLIKELQSLGL
DVELLESTPAEAEGEKQAAEPRKASGF
NT seq 4224 nt   +upstreamnt  +downstreamnt
atggcgccgacgatccagaacaacttccggattcgcaagagctttgcgaagatccagaag
atcatcgacatccccaacctgatcgacatccagaagcaatcctacgaccagttcctacag
gtcgacgtgcccgcggaaaagcgggaggatactgggcttcagggcgtcttcaagtcggtt
ttccccatcaaggatttcaacgagaccagctccctcgagttcgtctcgtatcatctcgag
aaggcgaagtacgacgtcgacgagtgccaccagcgtggcatgacgtactcggctccgatc
aaggtcgtcgtccgtctggttgtctgggacaaggacgagaccaccggcgcgcagtcgatc
cgcgacgtgaaggagcaggaggtctacttcggcgagatcccgctgatgacggtgaacggt
acgttcatcatcaacgggaccgagcgcgtggtggtgagccagctccaccgttcgccgggc
gccttcttcgaccacgacaagggcaagagccactcctcggggaagctgctctacaacgcg
cggatcatcccgtaccgcggctcgtggctcgacttcgagttcgaccacaaggacatcctc
tacgtgcgcatcgatcgccgccggaagctgccggtgacggtcctcctgcgcgcgctcggc
ggcgtccccgacacggcgaagcgcaagccgatcgagtggaatggcaccgccgaggagatg
ctcaactacttctacgacaccgagacgatcttcctcggctccaagaaggacgagttcagc
aagtcggtggagctcgagctcctcaagggccagcgcgcgacccacgacatcgtcaacccg
aagacgggtgaggtgatcgtcaagaagaaccggaagttcacctccggcgcgatcaagaag
atcgaggctgcagggatcgaccggctgcccctcgatccggacgagctctggaccaaggtc
gccgcccacgacgtcgtggacgagagcaccggcgaggtcctcctcgaggtcaacgaccag
gtcagctccgaggcggtggaggagctccgggcccgcggcgtcaacgagttcaaggttctc
ttcatcgacaacctgaacgtcggcccgcacctgcgcaacacgctgatgctcgacaaggtc
tcctcgcccgaggaggcgatcatggagatctacaagcgcctccggcccggcgatccgccg
acccccgagaccgcgacgaacctcttcctcaacctcttcttcaactccgagcggtacgac
ctctcgcgggtgggccggctcaagctgaactaccggctccacgaccgtctcccggaggag
gagcgcgaggccctcgacaccccagtcctcaccaagcgggacgtcctcgaggccgttcgc
gtcctggtcgatctcaagaacggccacggcaacatcgacgacatcgaccacctcggcaac
cgtcgcgtccgggcggtgggcgagctcctcgagaaccagtaccggatcggtctggtgcgc
atggagcgtgcgatcaaggagcggatgtcgctccaggagatcgagacgctgatgccgcac
gacctgatcaacgccaagccggtgacggcggtgatcaaggagttcttcggctcgtcgcag
ctgtcgcagttcatggaccagacgaacccgctctccgaggtcacgcacaagcggcgtctc
tcggccctcgggcctggcggcctcacccgcgagcgcgcgggcttcgaggtccgcgacgtc
cacccgacacactacggccgcatctgccccatcgagacgccggaaggcccgaacatcggt
ctgatcgcctcgctgtcgaccttcgcccgcgtgaacgagtacggcttcgtcgagacgccg
taccgccgctgcgaggacggcaaggccagcgccgaagtgaccttctactccgccctcgag
gaggagaagcacaccatcgcccaggcgaactccctcctggcggatgacggctccttcagc
gaggagacggtgtcctgccgcaagggccgtggcgagttcgtgaacgcccgtcccgaggac
gtctcgctgatggacgtctcgccgaaccagctggtgtcggtggcggcctcgctgatcccg
ttcctcgagaacgacgacgcgaaccgcgcgctcatgggctcgaacatgcagcgccaggcg
gtgccgctcctccgcacccacgcgccgctggtcggcacggggatcgagggcacggtcgcc
cgcgactccggcgtctgcgccgtggcgaagcgggacggcatcgtggagtccgtcgacgcg
ggccgcatcgtggtgaaggccgacgtgccggcctcggtgaccgacgtgggctccgaggtc
gacatctacaacctcatcaagtacacgcgctcgaaccagaacacgtgcatcaaccagaag
ccgatcgtccgcaagggcgaccgggtccggaagggcgacgtgctggcggacggtccgtcc
accgagacgggcgagctcgccctcggccagaacgtggtcgtcgcgttcatgccgtggcag
ggctacaacttcgaggactccatcctgctctccgagcggatctccaaggaggacttcttc
acctcgatccacatcgaggagttcgagtgcgtcgctcgcgacaccaagctcggcaaggaa
gagatcacccgcgacatcccgaacgtcggcgaggaggccatgaaggacctcgacgaggcc
ggcatgatccggatcggcgccgaggtgcagcccggtgacgtcctcgtcggcaagatcacg
ccgaagggcgagacccagctctcccccgaggagaagctcctccgcgcgatcttcggcgag
aaggccggcgacgtccgcgacagctcgctccgcgtgccccccggcgtggtcggcacggtg
atcaacgccaaggtcttctcgcgcaagggcgtcgacaaggacgagcgcgccaaggagatc
gaggcggccgaagaggccaagctcctcaaggaccagaacgacgagatcaagatcctccgc
gactccgcctacgcgaagatcgcccggatgctcggcggcaagaagacctccgccaagctc
gtcgacgacaagggtcagacgctcctcgagaagggcaccgagctctcggcttccgtcctc
gctggcgtcccccagaagtactggcccgagatcgtcaccgacggcaccgaggacctggtg
cgcaaggtggtcgcgtcgttcgaggagcagcgcgaggtgatcaagctcgtcttcggcgag
aagatctcccgcctgaagaagggcgacgagctgcctcctggcgtcatcaagatggtcaag
atctacgtggccatcaagcgcaagctcagcgtcggcgacaagatggcaggccgccacgga
aacaagggtgtcgtctcccggatcctcccggaagaggacatgccctacctggtcgacggc
acgccggtggacatcgtcctcaaccccctgggcgttccctcccgtatgaacatcgggcag
atcatggagacgcacctgggttgggcagcccgcggcatgggcctgaagctcgccgagatg
gccgagaaggcaggtggcgccgccgtccgcaaggagctcaaggccacttatccgggcaag
gagctcgcggccttcctggacgagctgccggacgacgaggtcatcaagctcggtcgtcgc
ctgaagaacggcatccacgtggcgagcccggtcttcgacggtggcgtcgagaccgagatc
gtcgacctcctgaagcagggcggtctgaaggagacggggcagagcatcctcttcgacggc
cgcaccggcgagccgttcgaccaggacgtcacggtcggcgtgatgtacatgctcaagctg
caccacctcgtcgacgagaagatccacgcccggagcatcgggccgtactccctcgtcacc
cagcagcccctcggcggcaaggcccagttcggcggccagcgcctcggagagatggaagtc
tgggcgatggaggcctacggcgcggcgtactcgctgcaggagttcctcacggtcaagtcc
gacgacgtggtgggccgcacgaggatgtacgaggcgatcgtcaagggcgacaacgtcctc
gagtccggtctccccgagtcgttcaacgtgctgatcaaggagctccagagcctcgggctc
gacgtggagctcctcgagtcgacgccggccgaggcagagggcgagaagcaggcagcggag
ccgcgcaaggcgagcgggttctag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   KEGG ORTHOLOGY (1)   
   RefGene (38)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (56)   

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