KEGG T01471: VAB18032

Verrucosispora maris: VAB18032_28881

Entry

VAB18032_28881 CDS T01471

Gene name

ligB

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

vma Verrucosispora maris

Pathway

vma03410	Base excision repair
vma03420	Nucleotide excision repair
vma03430	Mismatch repair
vma03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:vma03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:vma03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:vma03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:vma03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C

Other DBs

NCBI-GI:

330469704

NCBI-GeneID:

10453626

UniProt:

F4F695

Position

complement(5418508..5420124)

AA seq 538 aa
MRFLDLAATSAAVAATSGRRAKVELLAEALRRLDPVEIAAGAGWLAGELRQRQTGVGWAG
LRDLPPPAAEPTLTVGAVDAAIDAIAAVHGSGSQARRRALVHSLYAAATADEQRLLTGLF
LGELRHGAQAGLLADAIARAAGVPVAAVRRALLLAGDLREVAVAALAGGAAALAGFGLRV
GRPLAPMLAQSASSVDEALAATGTPAVVDVKLDGIRIQVHRSGSDIAVFTRSLDDITARV
PEVVAAVRALPARELVLDGEAIGLDETGRPLPFQQTSSAAARRGGSAGARSTGGPTAAAP
VAPAVRAAAASTGTTVLTPYFFDLLHLDGTDLIDAPGRERWAVLRGTVDAGLLVGRMEVD
EPQRAGEAFAAALDAGQEGVVVKAPDAPYEAGRRGAAWIKVKPRHTLDLVVLAVEWGSGR
RTGWLSNLHLGARDPRTGEFVMLGKTFKGLTDDLLRWQTERFLGLAVERGDWVVRVRPEQ
VVEIAFDGVQTSSRYPGGVALRFARVVRYREDKSAAEADTIDTVRAIHAGRPPAAPSP

NT seq 1617 nt +upstreamnt +downstreamnt
gtgcgattcctcgacctggctgccacctccgcagccgtcgccgcgaccagcggccggcgg
gcgaaggtcgagttgctcgccgaggcgttgcgccggctcgatccggtcgagatcgcggcg
ggagccggctggctcgccggtgagctgcgccagcggcagaccggtgtcggctgggccggc
ttgcgtgacctgccgccaccggcggcggagccgaccctgaccgtcggtgcggtcgacgcg
gccatcgacgcgatcgccgcggtgcacggcagcggatcacaggcccgtcgccgtgccctg
gtgcacagtctttacgcggcggccaccgccgacgagcagcggctgctcaccgggctgttc
ctcggcgagctgcgtcacggcgctcaggcggggctgctcgccgacgcgatcgcccgcgcc
gccggggtgccggtcgccgccgtacgccgcgcgttgctgctcgccggtgacctgcgtgag
gtggcggtggccgcgctcgccggtggcgctgccgccctggccgggttcgggctgcgggtc
gggcggccactcgcgccgatgctggcccagagcgcgtcctcggtcgacgaggcgttggcc
gccacgggcacccccgccgtggtcgacgtcaagctcgacggcatccgcatccaggtgcac
cgcagcgggtcggacatcgccgtgttcacccgcagcctggacgacatcaccgcccgggtg
cccgaggtggtcgccgcggtgcgggccctgccggcccgggagctggtcctcgacggcgag
gccatcggcctggacgagacgggccgacccctgcccttccagcagacctccagcgccgcc
gcccgacgcggcgggtcagccggtgcccggtccacaggcgggccgaccgctgccgcgccg
gtcgccccggcggtgcgcgccgccgccgcgagcaccggcacgacggtgctcacgccctac
ttcttcgacctgctgcatctggacggcacggatctgatcgacgcgccgggccgcgagcgg
tgggcggtgctgcgcggcacggtcgacgccgggttgctggtggggcggatggaggtggac
gagccgcagcgggccggcgaggccttcgccgccgcgctcgacgccggccaggaaggtgtc
gtggtcaaggcacccgacgcgccgtacgaagcgggccggcgcggcgcggcgtggattaag
gtcaagcctcggcacaccctggatctggtcgtgctcgccgtcgagtggggcagtggccgt
cgcaccggctggctgtccaacctgcacctgggggcgcgtgatccgcgcaccggcgagttc
gtgatgctgggcaagaccttcaaggggctcaccgacgacctgctgcgctggcagaccgaa
cgcttcctaggcctggcggtggagcggggcgactgggtggtgcgggtccgccccgagcag
gtggtggagatcgccttcgacggcgtgcagaccagttcgcgctatcccggtggggtggcg
ctgcgcttcgcgcgggtggtgcggtaccgcgaggacaagtccgccgccgaggccgacacg
atcgacaccgttcgcgccatccacgccggccgcccaccggccgcgccatcgccgtag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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