KEGG   Virgibacillus necropolis: CFK40_07975
Entry
CFK40_07975       CDS       T04976                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
vne  Virgibacillus necropolis
Pathway
vne03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:vne00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CFK40_07975 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vne03400]
    CFK40_07975 (ligD)
Enzymes [BR:vne01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CFK40_07975 (ligD)
DNA repair and recombination proteins [BR:vne03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CFK40_07975 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M RNA_ligase DNA_ligase_A_C
Other DBs
NCBI-ProteinID: ASN04953
UniProt: A0A221MBD4
Position
1710972..1712789
AA seq 605 aa
MKLMHPIARAQIPTEPGWVYEVKYDGFRCILHWEKGNIKLVSRNDIDLTDKFPEIIAFCL
ANQDVLSKLLPLKIDGELVIINNAFQANFSAIQKRGRLTKKETINKASEARPATFLAFDL
LEQKGSPLIKKTHMERKKLLLAFFKLAKINCTITRLNRLSFVPSYENERDLWGYVFDHKA
EGIIAKRKKSFYGSGKHHNDWFKIKNWRTLDGILTSLDTKNDYFTVKVNEGDHLVEVGKC
KHGVDSSELTTLRELFVSKGTKKGSEHVLPPAICAEINTLDFVKNELREPSIKKLLVNNS
AADCTRAKMQIDMAMIPASIEPSNTNKIFWPAKGQTKGDLLIYLREISPYMLPMLRDRIL
TVIRSPDGVREQFFFQKHLPDYAPSFIKSLPIDDEIFFICDQLESLLWFANHGAIEYHTP
FQTVGDPNPIEIVFDLDPPDRSRFPLAIQAANILKQLLDDLSLVSFVKTSGSKGIQVHIP
IPKNSLTYDETGIFTEAIAMTIEKEYPKLFTTERLKKNRSGRMYIDYIQHGKDKTIITAY
SPRKTEDATVATPLYWEEVGEGLTPEMFTINNVVERVQMLGCPFTGYADIGETQKMENVR
SLLEK
NT seq 1818 nt   +upstreamnt  +downstreamnt
atgaaattaatgcatccgatcgcacgcgcacaaatacctactgaacctggttgggtttat
gaagtaaagtatgacgggtttcgttgtattttgcattgggagaaaggtaatataaagcta
gtaagtagaaatgatatagatttaacagataagtttcctgagattatcgcgttttgtttg
gcgaaccaagacgtactatctaaactcctgccattaaaaattgatggtgagctggtaatt
attaataatgcgtttcaggcaaacttttccgcaatccaaaagcgagggcgtttaacgaag
aaagaaaccattaataaggcatctgaagcgagaccagcaacatttcttgcatttgattta
ttagaacagaaaggttcaccattgatcaagaaaacacatatggaacggaaaaaactgctt
cttgcattttttaaattagccaaaattaattgtactattacacggttgaatcgattaagt
tttgttccatcttatgaaaatgaaagggatttatggggatacgtttttgatcataaagct
gaaggaataatagctaaacgaaaaaaaagtttctatggttctggcaagcatcataatgac
tggtttaaaataaaaaactggcggacgcttgacgggattcttacctctttagataccaaa
aatgattattttactgtgaaagttaatgaaggggatcatctagttgaggtcggaaaatgc
aaacatggggttgatagtagcgaacttactacattacgtgaactatttgtttccaaagga
actaaaaaagggagtgaacatgtacttccacctgcgatttgtgctgaaataaatacactt
gattttgttaagaatgagctccgggagccatcgattaaaaagctattagtaaataactct
gcagcagattgtacgcgtgctaaaatgcaaatagatatggcaatgattccagcaagtatc
gaacctagcaatacaaataaaattttttggcccgccaaaggacaaactaaaggagattta
cttatctatttacgtgagatatcaccgtatatgcttcctatgttgcgtgatcggatatta
actgtcattcgatctcctgatggggtgagggagcaattcttttttcaaaaacatcttcca
gactatgcaccgtcatttataaaaagtttaccaattgatgatgaaatttttttcatttgt
gatcaattggaatcgcttctatggttcgcaaatcatggtgcaatcgaatatcatacacca
tttcaaacagttggtgatccaaatcctattgaaattgtatttgatttagatccacctgat
cgcagccgatttccgcttgccattcaagcagcaaacatactcaaacaattacttgatgat
ttaagtctggtttcctttgtaaaaacatctgggagtaaaggaatacaagttcacattccg
attccgaaaaatagtttaacgtatgatgagacaggaatctttaccgaggccattgcaatg
accattgaaaaagaatacccgaaactgttcacaacagaaagattaaagaaaaatcggagt
ggacggatgtatatcgattatattcagcatggcaaggataaaacaatcattactgcctat
tcaccaagaaaaacagaggatgctacggttgcgacaccattgtattgggaggaagtggga
gagggtctaacgccagagatgtttaccattaataatgttgtagaacgtgtacaaatgctt
gggtgtccatttactggatacgctgacataggtgagactcagaagatggaaaatgtacgg
agcttattggaaaaataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (20)   

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