KEGG   Vibrio nigripulchritudo: VIBNI_A2525
Entry
VIBNI_A2525       CDS       T02871                                 
Symbol
rnd
Name
(GenBank) ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
vni  Vibrio nigripulchritudo
Brite
KEGG Orthology (KO) [BR:vni00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:vni03016]
    VIBNI_A2525 (rnd)
Enzymes [BR:vni01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     VIBNI_A2525 (rnd)
Transfer RNA biogenesis [BR:vni03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    VIBNI_A2525 (rnd)
SSDB
Motif
Pfam: DNA_pol_A_exo1 RNAseD_HRDC_C HRDC
Other DBs
NCBI-ProteinID: CCO58584
UniProt: U4K7E9
Position
1:complement(2685435..2686550)
AA seq 371 aa
MNYQIVDTKEALEAVCLAARDADTVMLDTEFVRTRTFYPQLGLIQLFDGNVLSLIDPTVI
SDMTSFVGLLKDTSVLKVLHACGEDLEVFAHVFGTIPVPMMDTQIMAAFLGHGLSTGFAA
LVKEYLGVELDKSEARTDWLARPLTNKQLEYAAADVHYLLPMYEKLEAAVKDAGWWEAAQ
QESDLIASKRVVTHNPEKAYLDIKGAWQLRPNQLAILKILAQWRLEEALKRDLALNFVFR
EQNLWACARFGIKGLKQMEQQGFDHREIRRHGNTVISMVKKGEQVPQDEHPDVIERLMDK
PGYKQLFKQLKDEVKKASQKSGLATEFLASKKQINQLISWVWKKDRNPASVPDVMQGWRK
ELFGERLDKLV
NT seq 1116 nt   +upstreamnt  +downstreamnt
gtgaactaccaaatagtcgatacaaaagaagcattggaagctgtttgtttagctgcgcgc
gacgccgatactgtgatgctggacaccgagtttgtccgaacccgcactttttaccctcag
cttggcttaattcagctatttgatggcaatgtgctttccctcattgatcctactgtcatt
tccgacatgacatcgtttgttggccttcttaaagacacgtcagtgctgaaagtgcttcat
gcctgcggagaagacttagaagtgtttgctcacgtgtttggcaccattccagtacctatg
atggacacacaaatcatggctgcgtttttaggtcacggtttgtcgaccggttttgctgca
ttagtgaaagagtacttaggtgtcgagttggataaaagcgaagccagaaccgactggtta
gcaagacctttaacgaacaagcaattggaatatgccgcagccgatgtgcattatttgctg
ccaatgtatgaaaagctggaagctgcggtaaaagacgcgggctggtgggaagccgctcag
caggaatcagatctgattgcatctaaacgcgtggttacccataacccagagaaagcctat
ctggacattaaaggtgcctggcagctcagaccaaaccagctcgccatccttaaaattctg
gctcagtggcgtttagaagaagcgttaaaacgtgatttggcactgaactttgtcttccgc
gagcaaaacctgtgggcatgcgctcgatttggcatcaagggcttgaagcaaatggagcag
caaggttttgatcatcgtgaaattcgtcgccatggcaatactgtaatttccatggtgaaa
aagggtgaacaggtgccacaagatgagcaccctgatgtgattgaaagactcatggataag
ccgggctataaacagctattcaaacagctgaaagacgaagtcaaaaaagcgtctcaaaaa
agcggattagcgacggagttcctggcatcgaaaaaacaaatcaatcagttgatcagctgg
gtatggaagaaagacagaaatccagccagcgtgccagacgtaatgcaagggtggagaaaa
gagctctttggagagcgtctggataagcttgtgtga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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