KEGG   Vibrio owensii: A9237_09700
Entry
A9237_09700       CDS       T04844                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
vow  Vibrio owensii
Pathway
vow03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vow00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A9237_09700
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vow03019]
    A9237_09700
   03016 Transfer RNA biogenesis [BR:vow03016]
    A9237_09700
Enzymes [BR:vow01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     A9237_09700
Messenger RNA biogenesis [BR:vow03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     A9237_09700
Transfer RNA biogenesis [BR:vow03016]
 Prokaryotic type
  tRNA degradation factors
   A9237_09700
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 HTH_12
Other DBs
NCBI-ProteinID: AQW58331
Position
1:2122904..2125396
AA seq 830 aa
MSDNIPNDPFADRESKNYENPIPSREFITEFLQQAGVPMNRNDLFEALKLEGEEQYEGLR
RRLRAMERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSVGKDNDIVLPHH
QMKHIIHGDYVLVQPTDNSKRGRREGRLVRVLEERNTQIVGRFFLEYGYSYVVPDDSRIS
QDILIPNEHKAGARMGNVVVIEITDRGSRSRGMMGKVVEVLGENMAPGMETQIAIRTHQI
PHDWPAAVDKQIENLGEEVPEEAKEGRVDLRDLPLVTIDGEDARDFDDAVYCEKKKSGGW
RLWVAIADVSYYVRTDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCM
VCEMTISETGKLSGYKHYEAVMNSHARLTYNKVGAILEGDEELRMRYHAVVPHLEELHAM
YKVLKEARDNRGAIEFETVEAKFIFNADRKIESIEPVIRNDAHKIIEECMILANIASASY
VEKAKEPALYRVHESPGELRLQGFRDFLSELGLDLKGGLEPSPTDYADLVKQIAERQDKE
LIQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKEEGRN
QDRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVADWLKCEYMQDHVGDELDGVIA
NVTSFGFFVRLTELHIDGLVHISTLANDYYQFDPIGQRLIGESFGNIYRLGDAVKVKVLA
VNLNDKQIDFELIETSRKLRGKGKTAKKRAADAKRKAKEKKRAATKGGTRAIPAIEPTKR
PESAEAEKPRKNGAKRSDTEGAKKPKVKKARKKKPHSKPRKTKRTKSDAE
NT seq 2493 nt   +upstreamnt  +downstreamnt
atgtcagacaatattccaaacgatcctttcgcagatcgtgaatccaaaaattacgaaaac
ccaattccaagccgagagttcatcaccgagtttttgcagcaagctggtgtgccgatgaat
cgcaatgatttgttcgaagcattaaagctagaaggtgaagaacaatacgaaggtttgcgc
cgtcgactgcgagcaatggagcgtgatggacagctcgtgtttacacgtcgtcagtgctat
gcgctaccagaaaaactagagatggtgaaaggttacgtaattggccacaaagatggtcat
ggttgggttcgtcctgaaggcagtgtcggcaaggataatgacattgtactgccacaccat
cagatgaagcacatcatccatggtgattacgtgttggtgcaaccaactgataatagcaag
cgtggtcgtcgtgaaggtcgtcttgttcgcgtgttagaagagcgcaacacgcagatcgta
ggtcgtttcttcttagagtacggctactcatacgttgtgcctgatgactctcgtatcagc
caagatattctgatcccaaatgagcacaaagcaggtgctcgtatgggcaatgtggtcgtg
attgagattactgatcgcggctctcgctcacgtggcatgatgggtaaagtggttgaagtt
cttggcgagaacatggcgccgggcatggaaacgcaaatagcaatccgcacccaccaaatt
ccacacgattggccagcagccgtcgataaacagatcgaaaatctgggcgaagaagttccg
gaagaagcaaaagaaggtcgtgtcgatttacgtgacttgccactagtaaccattgatggc
gaagacgctcgtgactttgatgatgcggtttactgtgagaagaaaaagagcggcggttgg
cgtctatgggtcgcgattgctgacgtaagttactacgtacgtacagactctgcgctggac
aaagaagccatcaaccgtggtaactcggtgtacttcccatcgcaagtagtgccaatgcta
cctgaagtactatcaaacggcttatgttcacttaacccacaagttgatcgtctgtgtatg
gtgtgtgaaatgaccatctcagagacgggtaaactatcgggctacaagcactacgaagcc
gtgatgaactcgcacgctcgtctgacttacaacaaagtgggcgcgattctagaaggggat
gaagagctacgcatgcgttatcacgctgtcgttcctcaccttgaagagctgcacgcgatg
tacaaagtacttaaagaagcgcgtgataaccgtggtgcgattgaatttgaaaccgttgaa
gctaagttcatcttcaacgcggatcgtaagattgaaagcatcgagccagtgattcgtaac
gacgcacacaagatcatcgaagaatgtatgatcctagcgaacatcgcttcagcgtcttac
gttgagaaagcgaaagagccagcgttgtaccgtgttcacgaatctccgggtgaactgcgc
ctgcaaggtttccgtgacttcctcagtgagctaggtctggatctgaaaggtggtctagag
ccatcaccaaccgactacgctgatttggtaaaacaaatcgcagagcgtcaggacaaagaa
ctgattcaaaccatgttgctgcgctcaatgaagcaagcggtctacaacgcagacaatgcc
ggtcactttggtctagcgctgaaacgttacgcacacttcacgtcgccaattcgtcgttac
ccagacctactgttgcaccgcgcaatcaagtacctgattgctaaagaagaaggtcgcaac
caagatcgttggacgccaactggcggttaccactactcgtttgacgacatggacttttac
ggtgagcaatgttcgatgacagagcgccgtgcagacgacgcaactcgtgaagtggctgat
tggttgaagtgtgaatatatgcaagaccatgttggcgacgagctagatggtgttattgcc
aacgtaaccagctttggtttctttgttcgtctgactgaactgcatatcgatggtttggtg
cacatttcgacgctagcgaacgactactaccaatttgatcctattggtcaaagacttatc
ggtgaaagcttcggtaacatctatcgcctaggtgatgcggtgaaagtgaaagtgcttgcg
gttaacttaaatgacaagcaaattgactttgaattaatcgaaacaagccgtaagctacgc
ggcaaaggtaagactgcgaagaaacgcgcagcggatgccaaacgcaaagcgaaagagaaa
aagcgtgcggcaacgaaaggcggcactcgtgcaataccggcgattgaaccaaccaagcga
ccagaatctgctgaagcagaaaaacctcgcaaaaatggagcaaaacgcagtgacactgaa
ggtgctaaaaagccgaaagtgaaaaaagcacgcaagaaaaagccacacagtaagccgaga
aagactaagcgtactaagagcgacgctgagtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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