KEGG   Vibrio parahaemolyticus RIMD 2210633: VP0189
Entry
VP0189            CDS       T00120                                 
Name
(GenBank) formamidopyrimidine-DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
vpa  Vibrio parahaemolyticus RIMD 2210633
Pathway
vpa03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:vpa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    VP0189
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vpa03400]
    VP0189
Enzymes [BR:vpa01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     VP0189
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     VP0189
DNA repair and recombination proteins [BR:vpa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     VP0189
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS zinc-ribbons_6 Zn_Tnp_IS1595 Auto_anti-p27
Other DBs
NCBI-ProteinID: BAC58452
UniProt: Q87T81
Position
1:200912..201721
AA seq 269 aa
MPELPEVEVSRMGISPHMVGQTIKAFVFRTPKLRWDIPQELKLLEGQVIRNIRRRAKYLL
IDTDQGTAIVHLGMSGSLRVLDADFPAAKHDHVDLKLTNGKVLRYNDPRRFGAWLWCAPG
ESHAVLEHMGPEPLTDAFNSEYIADKAQGKRVAVKQFIMDNKVVVGVGNIYANESLFKSR
ILPTRQAGQVTPQEWVLLVENIKATLKIAINQGGTTLKDFAQADGKPGYFAQELLVYGKA
GEPCPECGEPLQELKIGQRNTFFCNECQQ
NT seq 810 nt   +upstreamnt  +downstreamnt
atgcctgaattaccagaagttgaagtaagccggatgggtattagtccacatatggttgga
caaacgattaaggcatttgtttttcgcacacccaaactgcgctgggatatcccgcaagag
cttaagcttttggaagggcaggttattcgtaatattcgtcgtcgcgccaagtacttattg
attgatactgaccaaggtacagcgattgttcaccttggcatgtctggatcattgcgcgta
ctcgacgctgacttccctgcggcaaagcacgatcatgttgaccttaaactcaccaatggc
aaagtgttacgctacaacgaccctcgacgctttggtgcttggctatggtgcgctcctggt
gagtcccatgcggtacttgagcatatgggaccagagcctctaactgatgcgtttaatagc
gagtacattgccgataaagcgcaaggcaagcgtgtcgcggtaaagcagttcatcatggac
aacaaagtcgtggtcggtgtggggaatatttacgccaatgaatctctgtttaaatctcgt
attctcccaacccgacaagcaggtcaagtgacgccccaagaatgggtactgttagtggaa
aacatcaaagccacgctaaaaattgccattaaccaaggtggtacgactttaaaagacttc
gctcaagccgatggcaagccgggttattttgctcaagaacttctagtgtatggaaaagcg
ggtgaaccttgcccagaatgtggagagccgcttcaagagctaaaaattggccaacgtaat
accttcttctgtaatgagtgccagcaatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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