KEGG   Vibrio parahaemolyticus RIMD 2210633: VPA0045
Entry
VPA0045           CDS       T00120                                 
Name
(GenBank) ada regulatory protein
  KO
K13529  AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
Organism
vpa  Vibrio parahaemolyticus RIMD 2210633
Pathway
vpa03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:vpa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    VPA0045
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:vpa03000]
    VPA0045
   03400 DNA repair and recombination proteins [BR:vpa03400]
    VPA0045
Enzymes [BR:vpa01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.21  DNA-3-methyladenine glycosylase II
     VPA0045
Transcription factors [BR:vpa03000]
 Prokaryotic type
  Helix-turn-helix
   AraC family
    VPA0045
DNA repair and recombination proteins [BR:vpa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     VPA0045
SSDB
Motif
Pfam: Ada_Zn_binding AlkA_N HTH_18 HTH_AraC HhH-GPD HTH_3
Other DBs
NCBI-ProteinID: BAC61388
UniProt: Q87K53
Position
2:36875..38242
AA seq 455 aa
MFIHPHTSLTFEQCQKARVSRDSRFDGRFYVAVKTTGIFCRPICPANLPKEENVEYFTDK
AQALKAGYRPCLRCRPDSAPGSWAWKGVETTFQRAISLIDRGELHHHSVSELAERVGISD
RYLRMLFEQYLGMSPKQYAQYQQLMFAKQLLHSSSMSVTEVGFAAGFNSTRRFNDAFQKF
LKLTPSQVRRREFDGVSTNRIALSYRGELNWQHMLDFYRLRAIEGVERVSGESYQRNVCL
DNSKAWFKAIKGEGNLELEFEIEEVAKLQNLVSGIRRMFDLDTDICTVEQHLDYVAPGLV
SNRGIRIPGVWNAWEAGVRAVLGQQVSVKAAIGQLNLLVKTLSGDADKRFFPTPDAIANA
DVSFLRMPQSRKETLVRFAQFMQSNAETDPQQWLALKGIGPWTVSYAQLRGQSQPDCFLD
KDLVVKKAMQRYPSLNTHTAAPWGSYATFHLWNQS
NT seq 1368 nt   +upstreamnt  +downstreamnt
atgtttatccatcctcatacatcgttgaccttcgagcagtgccaaaaggcgcgagtgtcg
cgagacagccgttttgatggtcgattttacgtcgcggtaaaaaccacagggattttctgc
cgaccgatttgtccggcgaacctacccaaagaagaaaatgtagagtacttcaccgataaa
gcccaagcacttaaagcgggttatcgtccttgtttgcgttgtcgcccagacagcgcgccg
ggatcgtgggcatggaaaggcgtagaaacaacatttcaacgcgcgatttcgttgattgat
cgaggagagctgcatcaccactcggtgtctgaactggcagagcgcgttggtatttctgat
cgttacttgcgtatgttgttcgagcagtatctcggcatgtcaccaaaacagtacgcgcaa
tatcagcagttaatgttcgccaaacagttgctgcattccagttcgatgtcggttacggaa
gttggcttcgccgccggttttaacagcacgcgccgtttcaacgatgcgttccaaaagttt
ctgaagctcacgccttctcaagttcgtcgaagagaatttgatggcgtgagcacgaatcga
attgcgttgtcttatcgtggcgagttgaattggcaacacatgctggatttttaccgacta
agagccattgagggcgtggagcgggtgagcggcgagagttaccaacgcaacgtttgtttg
gataacagcaaagcgtggtttaaggcgatcaaaggtgaaggaaaccttgagcttgaattc
gaaattgaagaagttgcgaagctgcaaaacttagtgtctggaatacgtcgtatgttcgat
ctcgacaccgatatttgtactgtcgagcagcatttggattatgtggcaccggggcttgta
tcgaaccgaggaattcggattcctggagtgtggaatgcttgggaagccggggttagagcc
gttttgggtcaacaagtgtcggtcaaggctgcgataggccagcttaacttattggtaaaa
acgctcagtggtgatgctgacaagcgctttttcccgacaccagatgcgattgcgaatgcc
gacgtgagttttttgcggatgccgcaaagtcgtaaagagacgttggtgcgtttcgctcag
tttatgcaaagcaacgcggagacggatccgcaacaatggttagcgctgaaaggcattgga
ccttggacggtcagttatgctcaactgcgtgggcaatcccaacccgattgctttttagat
aaagacttagtggtgaaaaaagcgatgcagcgctacccatcactcaatacgcacaccgca
gccccttggggaagctacgcgacgtttcacttatggaatcaatcatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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