KEGG   Vibrio parahaemolyticus BB22OP: VPBB_0196Help
Entry
VPBB_0196         CDS       T02409                                 

Definition
Formamidopyrimidine-DNA glycosylase
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
vpb  Vibrio parahaemolyticus BB22OP
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:vpb00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    VPBB_0196
Enzymes [BR:vpb01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     VPBB_0196
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     VPBB_0196
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
UniProt: 
Position
1:214870..215679
Genome map
AA seq 269 aa AA seqDB search
MPELPEVEVSRMGISPHMVGQTIKAFVFRTPKLRWDIPQELKLLEGQVIRAIHRRAKYLL
IETDAGTAIVHLGMSGSLRVLDADFPAAKHDHVDLKLTNGKVLRYNDPRRFGAWLWCAPG
ESHAVLDHMGPEPLTDAFNSEYIADKAQGKRVAVKQFIMDNKVVVGVGNIYANESLFKTR
IHPTRPAGKLTKKEWRLLVENIKATLEIAIQQGGTTLKDFAQADGKPGYFAQELLVYGKA
REPCPECGKALQEQKIGQRNTFFCNVCQQ
NT seq 810 nt NT seq  +upstreamnt  +downstreamnt
atgcctgaattaccagaagttgaagtaagccggatgggtattagtccacatatggttgga
caaacgattaaggcatttgtttttcgcacgcccaaactgcgctgggatatcccgcaagag
ctgaaattgcttgaagggcaagtgattcgagccattcatcgtcgcgcaaagtatttgctc
atagaaacggatgcaggaactgctattgtgcaccttggaatgtcaggctcgttacgtgtg
ttggatgctgattttcctgcggctaagcacgatcatgtcgatctcaaacttacaaatggt
aaagtgctgcgttataacgaccctcgacgctttggtgcttggctatggtgcgcacctggt
gagtcccatgcggtacttgatcatatggggccagagcctctaactgatgcgtttaatagc
gagtacattgctgataaagcgcaaggtaagcgtgttgcggttaaacagttcattatggac
aataaagtggtggttggcgttgggaatatctacgccaatgagtctttgtttaaaacccgc
attcacccaactcgcccagcaggaaaactaactaagaaagagtggcgattactggtggag
aacatcaaagccacgttagaaatcgcgattcagcaaggtggaactacacttaaagacttc
gctcaagcagacggcaaacctggttactttgcacaagagttattagtttacggaaaagcc
agagagccatgtccagaatgcggtaaagctctccaagagcagaaaatagggcaacgtaat
accttcttttgcaatgtgtgtcagcagtag

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