KEGG   Variovorax paradoxus B4: VAPA_1c08140
Entry
VAPA_1c08140      CDS       T02835                                 
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase RfbB
  KO
K01710  dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
Organism
vpd  Variovorax paradoxus B4
Pathway
vpd00521  Streptomycin biosynthesis
vpd00523  Polyketide sugar unit biosynthesis
vpd00525  Acarbose and validamycin biosynthesis
vpd00541  O-Antigen nucleotide sugar biosynthesis
vpd01100  Metabolic pathways
vpd01110  Biosynthesis of secondary metabolites
vpd01250  Biosynthesis of nucleotide sugars
Module
vpd_M00793  dTDP-L-rhamnose biosynthesis
Brite
KEGG Orthology (KO) [BR:vpd00001]
 09100 Metabolism
  09107 Glycan biosynthesis and metabolism
   00541 O-Antigen nucleotide sugar biosynthesis
    VAPA_1c08140 (rfbB)
  09109 Metabolism of terpenoids and polyketides
   00523 Polyketide sugar unit biosynthesis
    VAPA_1c08140 (rfbB)
   01055 Biosynthesis of vancomycin group antibiotics
    VAPA_1c08140 (rfbB)
  09110 Biosynthesis of other secondary metabolites
   00521 Streptomycin biosynthesis
    VAPA_1c08140 (rfbB)
   00525 Acarbose and validamycin biosynthesis
    VAPA_1c08140 (rfbB)
Enzymes [BR:vpd01000]
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.1  Hydro-lyases
    4.2.1.46  dTDP-glucose 4,6-dehydratase
     VAPA_1c08140 (rfbB)
SSDB
Motif
Pfam: GDP_Man_Dehyd Epimerase RmlD_sub_bind NAD_binding_4 Polysacc_synt_2 3Beta_HSD adh_short
Other DBs
NCBI-ProteinID: AGU47934
UniProt: T1X6H0
Position
1:892383..893465
AA seq 360 aa
MILVTGGAGFIGANFVLDWLAQSEEPVVNLDKLTYAGNLETLASLKGDPRHIFVQGDIGD
SALVDRLLAEHKPRAIVNFAAESHVDRSIHGPEDFVQTNVLGTFRLLESVRGHWSAQPAE
QKAAFRFLHVSTDEVYGSLSKTDPAFTEENKYEPNSPYSASKAASDHLVRAWHHTYGLPV
LTTNCSNNYGPFHFPEKLIPLMIVNALAGKPLPVYGDGMQVRDWLYVKDHCSAIRRVLEA
GQLGETYNVGGWNEKPNIEIVHTVCALLDELRPRADGQPYKAQISYVTDRPGHDRRYAID
ARKLERELGWKPAETFDSGIRKTVEWYLAHGEWVRNVQSGAYRAWVEKQYDAAPAAQAAA
NT seq 1083 nt   +upstreamnt  +downstreamnt
atgatcctggtaaccggcggcgcgggcttcatcggcgccaacttcgtactcgactggctg
gcgcagagcgaagagcctgtcgtgaatctcgacaaactgacctacgccggcaacctcgag
acgctcgcgtcgctcaagggcgacccgcggcacatcttcgtgcagggcgacatcggcgac
agcgccctggtcgatcgcctgctggccgagcacaagccgcgcgccatcgtgaactttgcc
gcggaatcgcacgtggaccgctccatccacggccccgaagacttcgtgcagaccaacgtg
ctcggcaccttccgcctgctcgagtccgtgcgcggccactggagcgcgcagccggccgag
cagaaggccgccttccgcttcctgcacgtgtccaccgacgaggtctacggctcgctctcc
aagaccgaccccgccttcaccgaagagaacaagtacgagcccaacagcccctactcggcc
agcaaggccgccagcgaccacctcgtgcgcgcctggcaccacacctacggcctgccggtg
ctcaccaccaactgctccaacaactacgggcccttccacttccccgagaagctcattccg
ctgatgatcgtcaacgccctggccggcaagcccctgcccgtgtacggcgacggcatgcag
gtgcgcgactggctctacgtgaaggaccattgcagcgccatccgccgcgtgctcgaagcc
ggccagctcggcgagacctacaacgtcggcggctggaacgagaagcccaacatcgagatc
gtccacaccgtctgcgccctgctcgacgaactgcgcccccgtgccgacggccagccctac
aaggcgcagatcagctacgtcactgaccgccccggccacgaccgccgctacgccatcgac
gcgcgcaagctcgagcgcgaactcggctggaagcccgccgaaaccttcgacagcggcatc
cgcaagaccgtcgagtggtacctggcccacggcgaatgggtgcgcaacgtgcaaagcggc
gcctaccgcgcatgggtcgagaagcaatacgacgccgcacccgcggcccaggcggcggca
tga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (8)   
   KEGG PATHWAY (7)   
   KEGG MODULE (1)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (27)   

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