KEGG T02835: VAPA

Variovorax paradoxus B4: VAPA_1c09560

Entry

VAPA_1c09560      CDS       T02835

Symbol

rlmI

Name

(GenBank) ribosomal RNA large subunit methyltransferase I Rlml

K06969

23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]

Organism

vpd Variovorax paradoxus B4

Brite

KEGG Orthology (KO) [BR:vpd00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:vpd03009]
    VAPA_1c09560 (rlmI)
Enzymes [BR:vpd01000]
2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.191  23S rRNA (cytosine1962-C5)-methyltransferase
     VAPA_1c09560 (rlmI)
Ribosome biogenesis [BR:vpd03009]
Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    VAPA_1c09560 (rlmI)

SSDB

Motif

Pfam:

Methyltrans_SAM PUA_3 Methyltransf_31 Methyltransf_25 Cons_hypoth95 Methyltransf_10

Other DBs

NCBI-ProteinID:

AGU48076

UniProt:

T1X6K8

Position

1:1053375..1054595

AA seq 406 aa
MKTLRLKPGKERSLQRRHPWIFESAIARGGADSGETVRVESHDGAFLAWAAFSPVSKIRA
RAWSFVETQRIDAAFLASVCARAVAARALFDLQSDGVRLIHGEADGLPGLIVDRYGDTLV
AQFLSAGVERWKAAIADALLAATGLHKLYERSDASGREREGLKPVTGWLRGEGATEITIR
EHGWKLSLDIATGHKTGFYLDQRDSRQRFAELAQHRRFRRVLNCFCYTGGFTVAALAGLR
AADAVEGAELVSVDSSQPALERARAHLALNGFGGEGSGLKTEFLDANVNTVLREFIEQGR
TFDAIVLDPPKFAPTAAHAERAARAYKDINRLALKLLEPGGVLLTFSCSGGISADLFHKI
VASAGIDAQVDGYISERLGAAPDHPMTIEFPEGEYLKGLVVVKKLA

NT seq 1221 nt +upstreamnt +downstreamnt
atgaaaaccctccgcctcaagcccggcaaggagcgctcgctgcagcgccgccatccctgg
atcttcgaatccgccattgcacgcggcggtgccgattcgggcgagacggtgcgcgtcgaa
tcccacgacggcgccttcctggcctgggccgccttcagcccggtttccaagattcgcgcg
cgggcctggagctttgtcgaaacgcagcgcatcgatgccgcattcctggcgtcggtgtgc
gcccgcgcagtggcggccagggcgcttttcgacctgcagagcgacggggtccggctgatc
cacggcgaggccgacgggctgccgggcctgatcgtcgaccggtacggcgacacgctggtg
gcgcagttcctgtcggccggcgtcgagcgctggaaggccgcgattgccgatgcgctgctc
gcggcgaccggcctgcacaagctctacgagcgctccgatgccagcggccgcgaacgcgaa
ggcctgaagccggtcaccggctggctgcgcggggagggcgccaccgagatcacgatccgc
gagcacggctggaagctctcgctcgacatcgccaccggccacaagaccggcttctacctc
gaccagcgcgacagccgccagcgctttgccgaactggcgcagcatcgtcgctttcggcgc
gtgctcaactgcttctgctacaccggcggcttcacggtggccgcgctcgcgggcctgcgg
gcggcggatgcggtggagggcgccgagctggtgtcggtcgattcatcgcagccggcgctc
gagcgggcgcgggcgcacctggcgctgaacggcttcggcggcgaggggtcgggcctgaag
acggaattcctggatgccaacgtcaacaccgtgctgcgcgagttcatcgagcagggccga
accttcgatgccatcgtgctcgatccgcccaagttcgcacccacggcggcccatgccgag
cgcgccgcccgcgcctacaaggacatcaaccgcctcgcgctcaagctgctggagcccggc
ggcgtgctgctgaccttttcctgctcgggcggcatcagcgccgatcttttccacaagatc
gtggcttcggccggcatcgatgcacaagtggacggctacatcagcgagcgcctgggcgcc
gcgcccgaccaccccatgaccatcgagttccccgagggcgaatacctcaaggggctggtg
gtggtgaaaaagctggcctga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

Download RDF

DBGET integrated database retrieval system