KEGG   Variovorax paradoxus B4: VAPA_1c20980
Entry
VAPA_1c20980      CDS       T02835                                 
Name
(GenBank) putative exodeoxyribonuclease III
  KO
K01142  exodeoxyribonuclease III [EC:3.1.11.2]
Organism
vpd  Variovorax paradoxus B4
Pathway
vpd03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:vpd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    VAPA_1c20980
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vpd03400]
    VAPA_1c20980
Enzymes [BR:vpd01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.2  exodeoxyribonuclease III
     VAPA_1c20980
DNA repair and recombination proteins [BR:vpd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    AP endonucleases
     VAPA_1c20980
SSDB
Motif
Pfam: Exo_endo_phos Sel_put RuBisCO_small
Other DBs
NCBI-ProteinID: AGU49202
UniProt: T1X8E6
Position
1:2219806..2220588
AA seq 260 aa
MKIATFNVNGINSRLALVLAWLAESRPDVACLQELKSPDQNFPAAAIREAGYGVLFHGQR
AWNGVAILARGREPIETGRGLDGNSEDSQSRYLEAVVGGVIVGCLYLPNGNPQPGPKFDY
KLEWFERLNAHARLLYGCGMPAVLAGDFNVVPTDADIYNPASWQDDALLQPESRAAFARL
LKQGWTDAIRARHPDEAIYTYWDYWRNRWPRNAGLRIDHLLLNRELAPLLTDANVDREVR
GRPGASDHAPVWVELDLPAC
NT seq 783 nt   +upstreamnt  +downstreamnt
atgaagatcgcgaccttcaacgtcaatggcatcaacagccggcttgcgcttgtgctggcg
tggctggccgagtcccgcccggacgtggcctgcctgcaggagctgaaatccccggaccag
aactttcccgccgcggccattcgcgaggcgggctacggcgtgctgttccacggccagcgc
gcatggaacggcgtggccattctggcgcgtggaagggagccgatcgaaaccggccgcggg
ctcgacggaaactccgaagacagccagagccgctatctcgaagccgtggtgggcggcgtg
atcgtcggctgcctgtacctgcccaacggcaatccgcagcccggccccaagttcgactac
aagctcgaatggttcgagcggctgaacgcccatgcgcgccttctctacggctgcggcatg
ccggcggtgctggccggcgacttcaacgtggtgcccaccgatgcggacatctacaacccc
gcgtcatggcaggacgacgcactgctgcagccggaaagccgcgcggccttcgcccgcctg
ctgaagcaaggatggaccgacgcgatccgtgcgcgccatcccgacgaagcgatctacacc
tattgggactactggcgcaaccgctggccgcgcaatgcgggcctgcgcatcgaccacctg
ctgctcaaccgcgaactcgcacccttgctgaccgatgcgaacgtggaccgcgaagtgcgc
ggccggcccggggcgagcgaccacgcgccggtctgggtcgagctcgacctgcccgcatgc
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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