KEGG   Variovorax paradoxus B4: VAPA_1c26980
Entry
VAPA_1c26980      CDS       T02835                                 
Name
(GenBank) putative DNA polymerase III, subunit delta'
  KO
K02341  DNA polymerase III subunit delta' [EC:2.7.7.7]
Organism
vpd  Variovorax paradoxus B4
Pathway
vpd03030  DNA replication
vpd03430  Mismatch repair
vpd03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vpd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    VAPA_1c26980
   03430 Mismatch repair
    VAPA_1c26980
   03440 Homologous recombination
    VAPA_1c26980
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vpd03032]
    VAPA_1c26980
   03400 DNA repair and recombination proteins [BR:vpd03400]
    VAPA_1c26980
Enzymes [BR:vpd01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     VAPA_1c26980
DNA replication proteins [BR:vpd03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     VAPA_1c26980
DNA repair and recombination proteins [BR:vpd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     VAPA_1c26980
SSDB
Motif
Pfam: DNA_pol3_delta2
Other DBs
NCBI-ProteinID: AGU49796
UniProt: T1XBD1
Position
1:2865488..2866510
AA seq 340 aa
MSTSALSPWLHRPLAELLRQRGHAWLLQGPSGLGQYELALALAAAWLCEQPKEEGGGTAC
GHCPSCHAIEVRTHADLCVLMPEVAMQELGWPLDEKAQADIDDKKRKPSREIRVEAMRDA
VGFAQRTSARGRGKVVLVYPAERMNTITANALLKTLEEPVGDVRFVLASEAAWQLLPTIR
SRCLGFTLPWPETAEAEAWLAAQEVPAADAAALLRAAGGRPSDALRLARSGQSPKAWALL
PKAVSRGDVAALADQSPSQAIGSLQKLCHDLMAVGSGAAPRFFEAADLPPAVPSHLALAR
WSKSLANAARTAEHPFNAGLMLEALVSEARTTLNSAARRP
NT seq 1023 nt   +upstreamnt  +downstreamnt
atgagcacttcggcgctttcgccctggctgcatcggccgctcgctgaactcctgcgccag
cgcggccatgcctggctgctgcaggggccttcgggactcggccaatacgaactcgcgctc
gcgcttgccgcggcctggctgtgcgaacagcccaaggaagaggggggtggcaccgcctgc
ggccattgcccgagctgccatgccatcgaggtgcggacccacgccgacctttgcgttctg
atgcccgaggtcgccatgcaggagctgggctggccgctcgacgaaaaggcgcaggccgac
atcgacgacaagaagcgcaagcccagccgcgagatccgcgtcgaggccatgcgcgatgcg
gtcggatttgcccagcgcaccagtgcccgcggccgcggcaaggtggtgctggtgtatccg
gccgagcgcatgaacaccatcaccgccaatgcgctgctcaagacgctcgaggagccggtt
ggcgacgtccgcttcgtgctggccagcgaggcggcgtggcaattgctgccgaccatccgc
agccgctgcctgggtttcacgctgccatggcccgagacggccgaggccgaagcctggctg
gcggcgcaggaagtgcccgccgcagatgccgccgcattgctgcgcgccgccggcgggcgg
cccagcgatgccctgcggctcgcgcgctccggccagtcgcccaaggcctgggcgctgctg
cccaaggccgtttcgcgcggcgacgtggccgccctcgcggaccagtcgccgtcccaggcc
atcggctcgctgcagaagctctgccacgacctgatggccgttggcagcggcgccgcgccg
cgtttcttcgaggccgccgacctgccgcccgccgtgccttcgcacctggcgctcgcgcgc
tggtcgaagtcgctcgcgaacgcggccagaaccgccgaacaccccttcaatgcgggcctc
atgctggaagcgcttgtgagcgaagcgcgaaccaccctaaactctgcagctcgccgccca
tga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (14)   

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