KEGG   Variovorax paradoxus B4: VAPA_1c28780
Entry
VAPA_1c28780      CDS       T02835                                 
Name
(GenBank) hypothetical protein
  KO
K06915  DNA double-strand break repair helicase HerA and related ATPase
Organism
vpd  Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:vpd00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vpd03400]
    VAPA_1c28780
DNA repair and recombination proteins [BR:vpd03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Archaeal homologous recombinant proteins
     VAPA_1c28780
SSDB
Motif
Pfam: HerA_C DUF87 AAA_22 AAA_10 FtsK_SpoIIIE ResIII TrwB_AAD_bind Zot AAA_19 AAA_16 AAA_7 T2SSE SLFN-g3_helicase AAA_30 AAA NTPase_1 AAA_28 nSTAND3 AAA_18
Other DBs
NCBI-ProteinID: AGU49973
UniProt: T1XBP3
Position
1:3043098..3044609
AA seq 503 aa
MADPLLIARHDTIECTLLPGLANRHGLITGATGTGKTVTLQTIAEKLSSIGVPVFMADVK
GDLTGMSQKGTIGEKMAATLKERGIELPESAACPVTLWDVFGEQGHPVRATVSDMGPLLL
GRMLDVNETQAGVLNLVFKIADDNGLLLLDLKDLRAMLQYVGENASQFTTEYGNISAASV
GAIQRGLLQIETQGGEKFFGEPMLNIADFMQTVGGKGVVNILAADKLMNSPRLYATFLLW
MLSELFEQLPEIGDPDQPKLAFFFDEAHLLFNEAPKALVERIELVVRLVRSKGVGVYFVT
QNPLDIPDSVLAQLGNRVQHALRAFTPRDQKAVKATATTMRQKPGLDIETAITELAVGEA
LVSFLDAKGRPSVTERVFVVPPGSQIGPVTPAQRQAVVANSLVAGVYEKTVDRESAYEKL
KGRAETAPDAPPAKTPGGKGAAETAEGSSMLNDLLFGSTGPRGGKRDGLVQTMAKSAVRT
MGTSVGKEILRGVLGGIFGAKKR
NT seq 1512 nt   +upstreamnt  +downstreamnt
atggccgaccctctcttgatcgcgcgccacgacaccatcgagtgcaccctgcttcccggc
ctggccaaccgccacggcctgatcaccggcgccaccggcaccggcaaaacagtcaccctg
cagaccatcgccgagaagctctcgagcatcggcgttccggtattcatggccgacgtcaag
ggcgacctgaccggcatgagccagaaaggcacgatcggcgaaaaaatggcggccacgctg
aaggaacggggcatcgagctgcccgaatcggccgcctgccccgtcaccttgtgggatgtg
ttcggcgaacagggccatccggtgcgcgccaccgtctccgacatgggccccctgctgctg
ggccgcatgctcgacgtgaacgaaacgcaggccggcgtgctgaacctggtgttcaagatc
gccgacgacaacggcctgctgctgctcgacctgaaggatctgcgcgccatgctgcagtac
gtgggcgagaacgcgagccagttcaccaccgagtacggcaacatcagcgctgccagcgtg
ggcgccatccagcgcggcctgctgcagatcgaaacccagggcggcgagaagttcttcggc
gagccgatgctcaacatcgccgacttcatgcagacggtgggcggcaagggcgtggtcaac
atcctggcggccgacaagctcatgaactcgccgcggctctacgccaccttcctgctgtgg
atgctgtcggaactgttcgagcagctgcccgaaatcggcgaccccgaccagcccaagctg
gccttcttcttcgatgaggcccacctgctcttcaacgaggcgcccaaggcgctggtggag
cgcatcgagctcgtggtgcggctggtgcgctccaagggcgtgggtgtgtatttcgtgacg
cagaaccccctcgacatcccggattcggtgctcgcccagctgggcaaccgcgtccagcac
gcactgcgcgccttcaccccgcgcgaccagaaggccgtcaaggccacggccaccaccatg
cgccagaagccgggactggacatcgaaaccgccatcaccgaactcgcggtgggcgaggca
ctggtgagttttctcgatgccaaggggcgcccgagcgtgaccgagcgcgtgttcgtggtg
ccgcccggcagccagatcggccccgtcacgcccgcgcagcgccaggcagtagttgccaat
tcgctcgtcgccggcgtgtacgagaagaccgtggaccgcgaatcggcctacgaaaagctc
aagggccgggccgaaaccgcgcccgatgcgccaccggccaagacgccgggcggcaagggt
gcggccgaaacggccgaaggcagcagcatgctgaacgacctgctcttcggcagcacgggc
ccgcgcggcggcaagcgcgacggcctggtgcagaccatggccaagtcggcggtacggacc
atgggcacctcggtcggcaaggaaatcctgcgcggcgtgctgggcggcatcttcggcgcc
aagaagcgctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (19)   
   Pfam (19)   
All databases (26)   

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