KEGG   Variovorax paradoxus B4: VAPA_2c10000
Entry
VAPA_2c10000      CDS       T02835                                 
Name
(GenBank) DNA-3-methyladenine glycosylase
  KO
K01246  DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
Organism
vpd  Variovorax paradoxus B4
Pathway
vpd03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:vpd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    VAPA_2c10000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vpd03400]
    VAPA_2c10000
Enzymes [BR:vpd01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.20  DNA-3-methyladenine glycosylase I
     VAPA_2c10000
DNA repair and recombination proteins [BR:vpd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     VAPA_2c10000
SSDB
Motif
Pfam: Adenine_glyco Lycopene_cycl
Other DBs
NCBI-ProteinID: AGU53556
UniProt: T1XLY2
Position
2:1027884..1028495
AA seq 203 aa
MGSTLLGPDGQPRCRWCAAAPEFLHYHDTEWGFPVTDDHRLFEKLCLEGFQSGLSWRTIL
VKRENFRTAFLGFDYRRVARLGERDVERLLGDSGIVRHRGKIEAVVHNARMAEEMAQREG
SLASYFWRHEPNPAQLAEPQTASASAVSQALSKDLKKQGWKFVGPTTVYAFMQAVGLIND
HAAGCVTRARVEQARRALALSIP
NT seq 612 nt   +upstreamnt  +downstreamnt
atgggctcgactctcctcgggcccgatgggcagccgcgctgtcgctggtgcgccgccgct
cccgagtttctccattatcacgatactgaatggggcttcccggtcacggatgaccaccgc
ctcttcgagaagctgtgcctggaaggcttccagtcgggcctgagctggcgcaccattctg
gtcaagcgagagaacttccggacagccttcctgggcttcgactaccggcgtgtcgcgcgc
ttgggcgaacgcgatgtcgagcgattgctcggcgacagcggcatcgtgcgccatcgcggc
aagatcgaggccgtggttcacaacgcgcgcatggccgaggagatggcgcagcgcgaggga
tcgctggcgtcttacttctggcgccacgagccgaaccctgcgcagctcgcagagccgcaa
accgcttctgcgtcagcggtctcgcaggccttgtccaaggacttgaagaaacagggctgg
aagtttgtcgggcccaccactgtgtatgccttcatgcaggccgtggggctgatcaatgac
catgctgccggctgcgtgacacgcgcccgggtcgaacaggcgcgccgggcgcttgcattg
tcgatcccctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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