KEGG T01392: Varpa

Variovorax paradoxus EPS: Varpa_0532

Entry

Varpa_0532 CDS T01392

Definition

DNA ligase d

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

vpe Variovorax paradoxus EPS

Pathway

vpe03410	Base excision repair
vpe03420	Nucleotide excision repair
vpe03430	Mismatch repair
vpe03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:vpe03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:vpe03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:vpe03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:vpe03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

573184..575793

AA seq 869 aa
MGTTRTASTARKALSRYHGKRDFSRTPEPKEGGRAGQGVLSFVIQKHHASRLHYDFRLEL
DGTLKSWAVPKGPCLDPTVKRMAVHVEDHPISYADFEGTIPPKQYGAGTVIVWDRGDWLP
EGGSEADARKALAAGKLKFELRGEKLKGHWTLVRMRGKGDEKQEPWLLIKERDDAARDLA
DYDVLEEQPASVLTGRGLDEVDSPPKKAAPAKKAAAKKPEKKAAKKEVKKEVKKKAALPA
TLQPQLAVLAASPPSSPDDWLYELKFDGYRLLARIDKGKVRCFTRNGHDWTDKLPVIAKA
LAKLPTDSAWLDGEITVEGGNGAPDFQALQNAFDRGATSSIVYWLFDAPFLDGQDLRDEP
VEERRAHLARLLGKRPPATLRLSEAFDASPRDLLASSARIGFEGIVGKRKGSPYVSRRSA
DWIKLKNQQRQEFVIGGYTAPKGSRSGFGALLLGVHDDKGRLRYCGNVGTGFNADRLADI
KARLDRLATDDCPFKPMPDGANAKAQWVKPTLVAEVSFGEWTREDRVRQAVFQGLRTDKP
ARGIVRERAAPSETSPETSTEASTDTPAKKQGARKSMALKITHADRVIDAKSGITKGELA
AYYDAVGTLMLPHLRGRPVSLVRAPDGVGGELFFQKHIQNREIPGVNLLDPALDPGHEPL
LQIDSKTGLIGAAQMNVIELHTWNATSRAIDRPDRMTFDLDPGEGVGWPQIQEATLLVRT
LLDELGLPSFLKTSGGKGMHVVVPIRRQYGWDEVKGFSQAVVVHLAKTIPDRFVAKSGPR
NRVGKVFVDYLRNGFGATTVSAWSARSRPGLGVSVPVAWEELPALTGAAQWTVANVAERL
ATGNKPWAAMERSRKGIAAAMKMLDYKPA

NT seq 2610 nt +upstreamnt +downstreamnt
atgggaacaacccgcaccgcatcgaccgcgcgcaaggcgctttcccgctaccacggcaag
cgcgatttctcgcgcacgccggagcccaaggagggcggccgcgcgggccagggcgtgctc
tccttcgtcatccagaagcaccacgcgagccgcctgcactacgacttccggctcgaactc
gacggcacgctcaagagctgggccgtgccgaaaggaccgtgcctcgatccgacggtcaag
cgcatggcggtgcatgtcgaggaccatccgatttcgtatgcggacttcgagggcaccatt
ccgccgaagcaatacggtgccggcaccgtcatcgtgtgggaccgaggcgactggctgccg
gaggggggtagcgaagccgacgcgcgcaaggcgctcgcggccggcaagctcaagttcgag
ctgcgcggcgaaaagctcaagggccactggacgctggtgcgcatgcgcggcaagggcgac
gagaagcaagagccgtggctgctcatcaaggagcgcgacgacgcggcgcgcgatcttgcc
gattacgacgtgctcgaagagcaacccgcgagcgtgctgaccggccgcggcttggacgag
gtggacagtccgccgaagaaggcggcgcccgccaaaaaggccgcggcgaagaagcccgag
aagaaagcggcaaagaaggaggtcaagaaggaggtcaagaagaaggccgccttgcccgcc
acccttcaaccgcagctcgcggtcctcgccgcttcgcctccgtcatcgcccgacgactgg
ctctacgaactcaagttcgacggctaccgcctgctcgcgcgcatcgacaagggcaaggtg
cgctgcttcacccgcaacggccatgactggaccgacaagctgcccgtcatcgccaaggcc
ctcgccaagctacccaccgattcggcctggctcgacggcgagatcaccgtggaagggggc
aacggcgcgcccgatttccaggcgctgcagaacgccttcgaccgcggtgcgacttcatcc
atcgtctactggctgttcgatgcgccctttctcgatgggcaggacctgcgcgacgagccg
gtcgaggagcgacgtgcgcacctggcccgcctgctcggcaagcggccaccggcgacgctg
cgcctgagcgaggccttcgatgcgtcgccgcgcgacctgcttgcgtcgtccgcgcgcatc
ggcttcgagggcatcgtcggcaagcggaagggctcgccgtacgtgtcgcgccgctcggcc
gactggatcaagctcaagaaccagcagcgccaggagttcgtgatcggcggctacaccgcg
cccaagggttcgcgctcggggttcggcgcgctgctgctgggcgtgcacgacgacaagggg
cggctgcgctattgcggcaacgtgggcaccggattcaacgcggatcggctcgccgacatc
aaggcgcggctggacaggctggccaccgacgactgtcccttcaagcccatgccggacggc
gcgaatgcgaaggcgcaatgggtcaagcccacgctggtggccgaagtctctttcggcgaa
tggacgcgcgaagaccgcgtgcgccaggcggtattccaggggctgcgcaccgacaagccc
gcgcgcggcatcgtgcgcgaacgggcggcgccttccgagacatcgcccgagacatcaacc
gaagcatcaaccgacacacccgcgaagaagcaaggagcaaggaaatccatggcgctgaag
atcacccacgccgaccgcgtgatcgatgcgaagagcggcatcaccaagggcgaactcgcc
gcctactacgacgcggtgggcacgctcatgctgccgcacctgcgcgggcggccggtgtcg
ctggtgcgcgcgcccgacggcgtgggcggcgagctgttcttccagaagcacatccagaac
cgcgagatacccggcgtcaacctgctggaccccgcgctcgatccgggccacgagccgctg
ctgcagatcgacagcaagaccgggctcatcggcgccgcgcagatgaacgtcatcgagctg
cacacctggaacgccacctcgcgcgccatcgaccggcccgaccgcatgaccttcgacctg
gaccccggcgaaggcgtgggctggccgcagatccaggaagcgacgctgctggtgcgcacg
ctgctcgacgaactgggcctgccgtcgttcctgaagaccagcggcggcaaggggatgcat
gtggtggtgccgatccgccggcagtacggctgggacgaggtcaaggggttctcgcaggcc
gtggtggtgcacctggcgaagacgattccggaccgcttcgtcgccaagagcgggccgcgc
aaccgcgtggggaaggtgttcgtggattacctgcgcaacggcttcggcgcgaccacggtc
agcgcgtggtcggcgcggtcgcgcccggggctgggcgtgtcggtgccggtggcgtgggag
gagttgcccgccctgaccggcgccgcgcaatggaccgtcgccaacgtggccgagcgcctc
gccacgggcaacaagccgtgggcggcgatggagcgcagccgaaaaggcatcgccgcggcg
atgaagatgctcgactacaaaccggcgtag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-VPE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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