KEGG   Variovorax paradoxus EPS: Varpa_0915
Entry
Varpa_0915        CDS       T01392                                 
Name
(GenBank) RNA-binding S4 domain protein
  KO
K06182  23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
Organism
vpe  Variovorax paradoxus EPS
Brite
KEGG Orthology (KO) [BR:vpe00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:vpe03009]
    Varpa_0915
Enzymes [BR:vpe01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.21  23S rRNA pseudouridine2604 synthase
     Varpa_0915
Ribosome biogenesis [BR:vpe03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    Varpa_0915
SSDB
Motif
Pfam: S4 PseudoU_synth_2
Other DBs
NCBI-ProteinID: ADU35133
UniProt: E6VAM3
Position
complement(1025934..1026659)
AA seq 241 aa
MKNNNAPDDEGIRLAKRVAALAGVSRREAELLIENGAVRVDGVPAVLPQSRVQAHQQVEI
AAGAKPEPVVPVTMLLYKPAGMPTDNAHRLLVAANHHEPERAGQKFLPAHLKGQHCMTPL
ETGASGLVAYTQEFRIERKLQEDAGILEHEVMVDVAGTVSPEVLMRFERSPARVSIGRQA
EDGKQTGLRFALKGARPGQIAHLCDQMGLTIVAMRRIRIGRVPLAGLQPGQWRYLAPHER
F
NT seq 726 nt   +upstreamnt  +downstreamnt
atgaagaacaacaacgctcccgacgacgaaggcattcgcctcgccaagcgcgtggccgcc
ctcgccggcgtgtcgcggcgcgaggccgaactgctgatcgagaacggcgcggtgcgcgtc
gatggcgtgcccgcggtgctgccgcagtcgcgcgtgcaggcgcaccagcaggtcgaaatt
gcggccggcgccaagcccgagccggtggtgcccgtgacgatgctgctctacaagccggcc
ggcatgccgaccgacaacgcgcacaggctgctcgtggccgcgaaccaccacgagcccgaa
cgcgccggccagaaattcctgcccgcgcacctgaagggccagcactgcatgacgccgctg
gaaaccggcgccagcggtctcgtggcctatacgcaggagttccgcatcgagcgcaagctg
caggaagacgccggcatcctcgagcacgaggtgatggtcgacgtggccggcacggtgagc
cccgaagtgctgatgcgcttcgagcggtcgccagcccgcgtgagcatcggccgtcaggcc
gaggacggcaagcagacgggcctgcgcttcgcgctcaagggcgcgcggccggggcagatc
gcacacctgtgcgaccagatgggcctgaccatcgtcgcgatgcggcgcatccgcatcggg
cgcgtgccgctcgcggggttgcagcccggccagtggcgctacctggcgccgcacgaacgc
ttttga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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