KEGG   Variovorax paradoxus EPS: Varpa_1019
Entry
Varpa_1019        CDS       T01392                                 
Name
(GenBank) signal recognition particle protein
  KO
K03106  signal recognition particle subunit SRP54 [EC:3.6.5.4]
Organism
vpe  Variovorax paradoxus EPS
Pathway
vpe02024  Quorum sensing
vpe03060  Protein export
vpe03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:vpe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03060 Protein export
    Varpa_1019
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    Varpa_1019
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Varpa_1019
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vpe02044]
    Varpa_1019
Enzymes [BR:vpe01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.5  Acting on GTP to facilitate cellular and subcellular movement
    3.6.5.4  signal-recognition-particle GTPase
     Varpa_1019
Secretion system [BR:vpe02044]
 Sec (secretion) system
  Prokaryotic Sec-SRP core components
   Varpa_1019
  Eukaryotic Sec-SRP protein
   Varpa_1019
SSDB
Motif
Pfam: SRP54 SRP_SPB SRP54_N Zeta_toxin CbiA APS_kinase cobW AAA_22 AAA_19 AAA_16 AAA_31 AAA_33 AAA_30 nSTAND3 AAA_24 AAA_17 DO-GTPase1 AAA_28 AAA_14 Thymidylate_kin AAA_18 ResIII ATPase TsaE YqeC ArsA_ATPase Helicase_RecD KTI12 Rad17
Other DBs
NCBI-ProteinID: ADU35237
UniProt: E6UUR8
Position
1137543..1138931
AA seq 462 aa
MATALTEKFSRLVKTMSGQARITESNVQDMLREVRMALLEADVALPVVRDFVARVKEKAL
GQEVLGSLKPGQALVGIVNRELAATMGEGVSDINLAAQPPAVILMAGLQGAGKTTTTAKL
AKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTKQAGAEWFPSTPDQKPLDIARAALDHAK
RHYFDVLLVDTAGRLAIDEVLMTEIKQLHAALDPVETLFVVDAMQGQDAINTAKAFKEAL
PLTGIILTKTDGDSRGGAALSVRQVTGVPIKFAGTSEKIDGLEVFDAERHAGRILGMGDI
VALVEQVTAGVDVAAAQKLAAKVKSGAGFDLNDFLGQLQQMKQMGGLSSLMDKLPTQMAA
KATEADMTRAERDIRRKEGIIQSMTPLERRKPELLKATRKRRIAAGAGVQVQEVNRLLNE
FEQMQGMMKKMKGGGLMKMMKKMGGMKGMGGMGGAGGPKLPF
NT seq 1389 nt   +upstreamnt  +downstreamnt
atggccaccgcccttacagaaaagttctcccgcctcgtcaagacgatgagcggccaggcc
cgcatcaccgaaagcaacgtgcaggacatgctgcgcgaggtgcgcatggcactgctggag
gccgacgtggcgctgcccgtggtgcgcgacttcgtcgcccgcgtgaaggaaaaggcgctc
ggccaggaagtgctgggctcgctcaagccgggccaggcgctggtcggcatcgtgaaccgc
gagctcgcggcgaccatgggcgagggcgtgtcggacatcaacctcgcggcccagccgccc
gcggtgatcctcatggccggcctgcagggcgccggcaagaccaccaccaccgccaagctc
gccaagcacctgatcgagaagcgcaagaagaaggtgctcacggtttcgggcgacgtgtac
cgcccggccgccatcgagcagctcaagaccgtcaccaaacaggccggcgccgaatggttc
ccgagcacgccggaccagaagcctctcgacatcgcgcgcgccgcgctcgaccacgccaag
cgccactacttcgacgtgctgctggtcgacacggcgggccgcctcgcgatcgacgaagtg
ctgatgaccgaaatcaagcagctgcacgcagcgctcgatccggtcgaaaccttgttcgtg
gtcgacgccatgcagggccaggatgcgatcaacaccgccaaggccttcaaggaggcgcta
cccctcaccggcatcatcctgaccaagaccgacggcgattcgcgcggcggtgcggcgctg
tcggtgcgccaggtcacgggcgtgccgatcaagttcgccggcacgagcgagaagatcgac
ggcctggaggtgttcgacgccgagcgccatgcgggccgcatcctgggcatgggcgacatc
gtcgcgctggtcgagcaggtcacggccggcgtcgacgtggcggcggcgcagaagctagcg
gccaaggtcaagagcggcgcgggcttcgacctgaacgacttcctcggccagctgcagcag
atgaagcagatgggcgggctctccagcctcatggacaagctgcccacgcagatggccgcc
aaggcgaccgaggccgacatgacgcgcgccgagcgcgacatccgccgcaaggaaggaatc
atccagagcatgaccccgctggagcgccgcaagcccgaactgctcaaggccacgcgcaag
cgccgcatcgcggccggcgcgggcgtgcaggttcaggaagtgaaccggctgctcaacgag
ttcgagcagatgcagggaatgatgaagaagatgaagggcggcggcctcatgaagatgatg
aagaagatgggcggcatgaagggcatgggcgggatggggggggccggcgggccgaagctg
ccgttctga

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