KEGG T01392: Varpa

Variovorax paradoxus EPS: Varpa_1457

Entry

Varpa_1457 CDS T01392

Definition

isocitrate dehydrogenase, NADP-dependent (EC:1.1.1.42)

Orthology

K00031

isocitrate dehydrogenase [EC:1.1.1.42]

Organism

vpe Variovorax paradoxus EPS

Pathway

vpe00020	Citrate cycle (TCA cycle)
vpe00480	Glutathione metabolism
vpe01100	Metabolic pathways
vpe01110	Biosynthesis of secondary metabolites
vpe01120	Microbial metabolism in diverse environments
vpe01210	2-Oxocarboxylic acid metabolism
vpe01230	Biosynthesis of amino acids

Module

vpe_M00009	Citrate cycle (TCA cycle, Krebs cycle)
vpe_M00010	Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate

Class

Metabolism; Carbohydrate metabolism; Citrate cycle (TCA cycle) [PATH:vpe00020]
Metabolism; Metabolism of other amino acids; Glutathione metabolism [PATH:vpe00480]

SSDB

Motif

Pfam:

IDH

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(1618783..1621020)

AA seq 745 aa
MSTKQPTIVYTLTDEAPLLATYAFLPIVRAFTAPAGINVETSDISVAARVLGEFPEFLSD
AQKVPDNLAELGKLTLKPEANIIKLPNISASVSQLKSAIKELQDKGYKIPDYPENPTTDE
DKDIRARYNKCTGSAVNPVLREGNSDRRAPNAVKEYARKNPHSMADWSQASRSHVSHMHG
GDFYHGEKSMTLDRARNVKMELLTKSGKTVVLKSKVALLDREVIDSMFMSKKALLAFYEK
EIEDAHKTGVMFSLHVKATMMKVSHPIVFGHCVKIFYKEAFEKHGKLFDELGINVNNGMV
DLYNKIATLPQSTQDEIKRDLHACHEHRPELAMVDSAKGITNFHSPNDVIVDASMPAMIR
NGGKMWGADGRLKDVKAVMPESTFARIYQEIINFCKWHGAFDPKTMGTVPNVGLMAQKAE
EYGSHDKTFEIPEDGVANITDLDTGEVLMSEDVEQGDIWRMCQVKDAAIRDWVKLAVTRA
RNSGMPVVFWLDAYRPHEAQLITKVKMYLHEHNTSGLDIQIMSQVRAMRYTLERVVRGLD
TISATGNILRDYLTDLFPIMELGTSAKMLSIVPLMAGGGLYETGAGGSAPKHVQQLVEEN
HLRWDSLGEFLALAVSLEDLGLKTGNAQAKILAKTLDAATGKLLDNNKNPSPKTGQLDNR
GSQFYLAMYWAQELAAQTDDKELQAKFKKLAETLTANEKKIVDELAAVQGKPVDIGGYYL
ADPVKFETVMRPSATLNSVLASAQA

NT seq 2238 nt +upstreamnt +downstreamnt
atgagcacgaagcaacccaccatcgtctacaccctgaccgacgaggcgcccctcctggcg
acctacgcgttcctccccatcgtgcgcgccttcacggccccggccggcatcaacgtcgag
acgagcgacatctcggtggccgcccgcgtcctgggcgaattccccgaattcctgagcgac
gcacagaaggtgcccgacaacctggccgaactgggcaagctcacgctcaagcccgaagcc
aacatcatcaagctgcccaacatcagcgcctcggtgtcccagctcaagtcggcgatcaag
gagctgcaggacaagggctacaagattcccgactatcccgagaacccgaccaccgacgaa
gacaaggacatccgcgcgcgctacaacaagtgcaccggcagcgccgtgaacccggtgctg
cgcgaaggcaactcggaccgccgcgcccccaacgcggtgaaggaatacgcccgcaagaac
ccgcacagcatggccgactggagccaggcctcgcgctcgcatgtctcgcacatgcacggc
ggcgacttctatcacggcgaaaagtccatgacgctggaccgcgcgcgcaacgtcaagatg
gaactcctgaccaagagcggcaagaccgtcgtgctcaagtccaaggtggcgctgctggac
cgcgaggtcatcgactccatgttcatgagcaagaaggccctgctggccttctatgaaaag
gagatcgaggacgcgcacaagaccggcgtcatgttctcgctgcacgtcaaagccaccatg
atgaaggtctcgcaccccatcgtattcggccactgcgtgaagatcttctacaaggaagcc
ttcgagaaacacggcaagctgttcgacgagctgggcatcaacgtcaacaacggcatggtc
gatctctacaacaagatcgccacgctgccccagagcacgcaggacgagatcaagcgcgac
ctgcacgcctgccacgagcaccgccccgaactggccatggtcgactcggccaagggcatc
accaatttccattcgcccaacgacgtgatcgtggacgcatcgatgcccgcgatgatccgc
aacggcggcaagatgtggggcgccgacggccgcctgaaggacgtcaaggccgtgatgccc
gaatcgaccttcgcccgcatctaccaggagatcatcaacttctgcaaatggcacggcgcc
ttcgaccccaagaccatgggcacggtgcccaacgtcggcctcatggcccagaaggccgag
gaatacggctcgcacgacaagaccttcgagatccccgaagacggcgttgccaacatcacc
gacctggacaccggcgaagtgctgatgagcgaagacgtggaacagggcgacatctggcgc
atgtgccaggtcaaggacgccgcgatccgcgactgggtgaagctggccgtcacgcgcgca
cgcaactccggcatgccggtggtgttctggctcgacgcctaccgcccgcacgaggcgcag
ctgatcaccaaggtcaagatgtacctgcacgagcacaacacctcgggcctggacatccag
atcatgagccaggtgcgtgccatgcgctacacgctcgagcgcgtcgtgcgcggcctggac
accatcagcgccaccggcaacatcctgcgcgactacctcaccgacctgttccccatcatg
gaactgggcacctcggccaagatgctgtcgatcgtgccgctcatggccggcggcggcttg
tacgaaaccggcgcgggcggctcggcccccaagcacgtgcagcagctggtcgaagagaac
cacctgcgctgggattcgctcggcgaattcctcgcgctggccgtgagtctggaagacctg
ggcctgaagaccggcaacgcgcaagcgaagatcctggccaagacgctcgacgccgccacc
ggcaagctgctcgacaacaacaagaacccgtcgcccaagaccggtcagctggacaaccgc
ggcagccagttctacctggccatgtactgggcgcaggagcttgccgcgcagaccgacgac
aaggaactgcaagccaagttcaagaagctcgccgagacgctgacggccaacgagaagaag
atcgtcgacgaactcgcggccgtgcagggcaagccggtggacatcggcggctactacctc
gccgacccggtcaagttcgagacggtgatgcgcccgagcgcaacgctgaactcggtgctg
gcatcggcgcaagcctga

All links

Pathway (9)   
   KEGG PATHWAY (7)   
   KEGG MODULE (2)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (4)   
   KEGG ENZYME (1)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-VPE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (29)   

Download RDF

DBGET integrated database retrieval system