KEGG T01392: Varpa

Variovorax paradoxus EPS: Varpa_2796

Entry

Varpa_2796 CDS T01392

Definition

DNA ligase d

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

vpe Variovorax paradoxus EPS

Pathway

vpe03410	Base excision repair
vpe03420	Nucleotide excision repair
vpe03430	Mismatch repair
vpe03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:vpe03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:vpe03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:vpe03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:vpe03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S mRNA_cap_enzyme

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

3000221..3002785

AA seq 854 aa
MAKGDALSTYKSKRNFAVTAEPAEGGRPSPHALSFVVQKHAASRLHYDFRLELDGVMVSW
AVPKGPSFDPKEKRMAIHVEDHPISYSSFEGTIPPKQYGAGTVIVWDNGTWEPVGDPRKG
LAAGKLVFRLHGQKLEGLWELVNIAKGGERQEPWILFKKKDEYARAHADYDVVTALPDSV
IAKPIRKVRARASARSTASARPAPSKAPKPLARAPAKALLALPAQIKPQLATLAAGVPSA
GEWLYEIKFDGYRLMARLDKGEVALITRGGHDWAARMPTLVDELGALGLGSSFLDGEIVV
LGPRGAPDFNALQNAFDRGRDTQDIVFFVFDAPFFEGQDLRQVPLRDRRQLLHDFLAEKA
SEHVRFSANFEADPTSLLRSACQMEMEGVIAKRADAPYVSRRSETWLKLKCKLRQEFVIC
GYTDRTDEADQVGSLLLGVHDDGGKLASVGSVGTGWSGEEAREIKQKLLPLAAANSPFEK
GDTKPGRWSRRKAGSERWVKPQLLAEVSFAEWTPDGQIRHASFIGLRDDKPAKVIVRERP
KAVGAPAAAASSRTAAGSSSASITVTHGDRVIDATTGITKLDLVRYYDSVAEFILPHLKG
RPCSLVRGPTGVTGQLFFQKHGEKIGIPGITELPESLWPGHAALLEIGNAKALSGAAQMN
VIEFHTWNSTAKAIDKPDRMVFDLDPGEGTAWGHIQEAATLVRAMLEALGLKAWLKTSGG
KGLHVVVPLAPRYDYETVKGFSQAIVQHMARTIPARFVAKSGPSNRVGKLFVDYLRNGHG
ATTAAAFSARARPGLGVSIPVSWDDLGSLKSGSQWNVRTAREHLSFQTEDPWAGYWKTRQ
PLAQAMKRLGYEKR

NT seq 2565 nt +upstreamnt +downstreamnt
atggccaagggcgacgcgctttccacgtacaagtccaagcggaatttcgccgtgacggcg
gagcccgccgagggtggccggccgagtccccacgcgctgtcgttcgtcgtgcaaaagcat
gcggcgtcgcggctgcactacgacttccgactcgagctcgacggggtaatggtttcctgg
gcggtgcccaaggggcccagtttcgaccccaaggaaaagcgcatggccatccacgtggag
gaccatccgatctcctattcatccttcgaaggaacgattccgccgaagcagtacggcgcc
gggacggtgatcgtctgggacaacggcacctgggagccggtgggcgatccacgcaaaggc
ctggccgccggcaagctggtgttccggctgcacggccagaagctcgagggcctgtgggaa
ctggtcaacatcgccaagggcggcgaacggcaggagccctggattctgttcaagaagaag
gacgaatacgcgcgtgcgcatgccgactacgacgtcgtgacagcgttgcccgacagcgtg
atcgccaagccgatcaggaaggtgcgcgcccgtgcctccgcccgcagcactgcgtcggcg
cggcccgcgccttccaaggcgcccaagccgctcgcccgcgcgcccgcgaaagcgctgctg
gcgctgccggcgcagatcaagccgcagctggccaccctggccgcaggcgttccgtcggcc
ggcgagtggctctatgaaatcaagttcgatggctaccggctcatggcccggctcgacaag
ggggaggtcgcgctgataacgcgcggcggacacgactgggcggccaggatgccgacgctg
gtggacgaactcggcgccctgggcctcggctcgtcgttcctggacggcgaaatcgtggtg
ctgggaccccgtggtgcgcccgacttcaacgccttgcagaacgccttcgatcgcggccga
gacacacaagacatcgtgttcttcgtgttcgacgctcccttcttcgaaggccaggacctc
agacaggtgccgctgcgcgatcgccggcaactgctgcacgacttccttgcggagaaggcc
agcgaacacgtcaggttcagtgccaatttcgaagccgatccgacgtcgctgcttcgctcg
gcctgccagatggagatggaaggcgtgatcgccaagcgcgccgacgcaccctacgtttcc
cggcgcagcgaaacctggctgaagctcaagtgcaagctgcgccaggagttcgtgatctgc
ggctacaccgaccgcaccgacgaggccgaccaagtcggcagcttgctgctcggtgttcac
gacgacggcggcaagctggcgtcggtcggcagcgtcggcacaggctggagcggcgaggaa
gcccgtgagatcaagcagaagctgctgccgctggcggccgcgaattcgcctttcgaaaaa
ggcgacaccaagccgggtcgctggtccaggcgcaaggccggcagcgagcgttgggtgaag
ccgcagttgctggcggaggtcagctttgcggaatggacgcccgacgggcaaatccgccat
gcctcgttcatcggattgcgcgatgacaagcccgccaaggtcatcgtgcgggagcgcccc
aaggccgtcggcgcgcctgccgctgcggcgtccagccgcacggccgccggctcgtcgagc
gcttcgatcacggtgacgcacggcgacagggtcatcgatgccaccacgggcatcaccaaa
ctggatctggtgcgctattacgactccgtggccgaattcatcctgccgcatctcaagggt
cgtccttgctctttggtgcgcggcccgacaggcgtgaccggacagctgttcttccagaag
cacggcgaaaagatcggcattccgggcatcaccgaactgcccgagagcctgtggccgggc
cacgccgcactgctggagatcggcaacgccaaggcgctctccggcgccgcccagatgaac
gtgatcgagtttcatacgtggaactcgacagcgaaggcgatcgacaagcccgaccgcatg
gtgttcgacctcgaccccggcgaagggaccgcctggggccacatccaggaagcggcgacg
ctggtgcgcgcgatgctcgaagcccttggcctgaaggcatggctgaaaaccagcgggggc
aaggggctgcatgtggtcgtccccctggcgccgcgatacgactacgagaccgtcaagggg
ttctcccaggcgatcgtgcagcacatggccaggacgatcccggcgcgcttcgtggccaag
agcggcccgagcaaccgcgtgggaaagctgttcgtcgactacctgcgcaacgggcacggc
gcgacgaccgcggctgcgttctcggcgcgcgcgcggcccggcctgggcgtttcgatcccg
gtttcgtgggacgacctgggcagcctcaagagcggctcgcaatggaatgttcgaacagcg
cgcgaacacctgtctttccagacagaggatccatgggccggctactggaaaacgcgccag
ccgctggcgcaggccatgaagcgactcggctatgaaaaacgctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-VPE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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