KEGG T01392: Varpa

Variovorax paradoxus EPS: Varpa_2840

Entry

Varpa_2840 CDS T01392

Definition

ATP dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

vpe Variovorax paradoxus EPS

Pathway

vpe03410	Base excision repair
vpe03420	Nucleotide excision repair
vpe03430	Mismatch repair
vpe03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:vpe03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:vpe03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:vpe03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:vpe03450]

SSDB

Motif

Pfam:

DNA_ligase_OB_2 DNA_ligase_A_M

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(3045882..3046736)

AA seq 284 aa
MLNRRFLLLATLGLALVQPALARNAAPSLMLADVYRPSMSLADYWVSEKYDGVRGYWDGK
QLWTRGGEPVAAPAWFIASLPKQQLDGELWAGRGRFSHAVSTARSQTPNDVAWREMRFMV
FDMPAQPGDFTARLAALRKLLPITDAPWVVLVPQERATTHAELQALLDKTVKMGGEGLML
HRGSSPYRGERNNDLLKVKPYDDAEARVVGHVTGKGRNSHRLGALVVETPEGKRFKLGSG
LTDAERENPPAIGAWVTYRFNGTNASGLPRFARFMRVREDAPHS

NT seq 855 nt +upstreamnt +downstreamnt
gtgctgaaccgacgcttccttttgctcgcgaccctgggcctggccctggtccaaccagcg
cttgcgcgcaacgccgcgccctcgctgatgctggccgatgtctaccgccccagcatgtcg
ttggccgattactgggtcagcgagaaatacgacggcgtgcgcggctactgggacggcaag
cagctctggacgcgcggtggcgagcccgttgcggcacccgcatggttcatcgcatcgctg
cccaagcaacagctcgacggcgagttgtgggccggtcgcggtcgcttctcgcatgcggtc
tccaccgcgcgcagccagacgccgaatgatgtcgcctggcgcgagatgcgcttcatggtg
ttcgacatgccggcgcagcccggcgacttcaccgcccgattggcggctctccgcaagctg
ctcccgatcaccgatgcgccgtgggtcgtgctcgtgccgcaggaacgcgccaccacgcac
gccgagctgcaggccctgctggacaagacggtgaagatgggcggcgaaggcttgatgctg
catcgcggcagctcgccctaccgtggcgagcgcaacaacgacctgctcaaggtcaagccc
tacgacgatgccgaagcccgcgtggtcggccacgtgaccggcaagggccgcaacagccac
cggctcggggccctcgtcgtcgagacgcccgagggcaaacgcttcaagctcggcagcggc
ttgaccgatgccgagcgcgagaacccgcccgccatcggcgcctgggtcacctaccgcttc
aacggcacgaatgccagcggtctgccgcggttcgcgcgcttcatgcgggtgcgcgaagac
gccccgcactcctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-VPE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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