KEGG T01392: Varpa

Variovorax paradoxus EPS: Varpa_3068

Entry

Varpa_3068 CDS T01392

Definition

signal transduction histidine kinase with cheb and cher activity

Orthology

K13924

two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]

Organism

vpe Variovorax paradoxus EPS

Pathway

vpe02020	Two-component system
vpe02030	Bacterial chemotaxis

Class

Environmental Information Processing; Signal transduction; Two-component system [PATH:vpe02020]
Cellular Processes; Cell motility; Bacterial chemotaxis [PATH:vpe02030]

SSDB

Motif

Pfam:

CheR PAS_9 PAS CheB_methylest PAS_4 PAS_10 HATPase_c Response_reg PAS_3 HisKA CheR_N PAS_8 PAS_11 PAS_7 Sec8_exocyst AAA_13 CENP-F_leu_zip IFT57 HATPase_c_3 IncA MCC-bdg_PDZ Fez1 OmpH Baculo_PEP_C Sec20 TBPIP HATPase_c_5 DUF4201 COG2 zf-C4H2 DUF342 DUF2450 CorA Phage_GP20

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

3307864..3312534

AA seq 1556 aa
MNDSTPDRAEEEGATQLDDAVPSFGYGLLPLVGLAGAAGSVEALCAFLQGTASDSGMAFV
AVLNLSDRGPKAFADLVQTLRAATALPVVPVDQRVRLAPDTLHVLPPGRPPHMRGNFIEP
AELPAGGGRHLPADLFFRTLADSHGPHATAVVLSGPDGDGTIGIKRVKERGGLTIVQDPR
ESAEGGMAQTALATGMVDWVLPAREMGTRIAAYYRLESQLRLPPEQPPAHDAALAEAALT
DPGEAALREVLAFVRDRTGRDFDDYKRATVLRRLGRRMQVNGVGNLQAYLDCLRTRPGEA
GALVHDMLISVTNFFRDSDSFAALEARVPELFRHKGPDDTLRAWVVACATGEEAYSIAML
LSEHARTLESPPSIQVFATDLDEEAVRAARDGIYPLAAEADLGEERIRQFFVREPRGLRV
RRELREMVLFAVHDVLRDAPFARIDLATCRNLLIYLNRDAQTRVLETLHFAMYPGAPLFL
GVSEAADGDGRLFAVADKPHRIYLRCQSRAGAPVPPRPVGPPRAAAARHSQAVIPLAAIA
PPVAPQAMLPTLRGGQTMTWAEMHLQLVDLLAPPSILVDAGHEMLHISPAATAFLYFGGG
EPSRNVMQAIVPDLKAELQTALHHAHERHEPVEVAPVRARIAGGEVEVTVSVRPVEAFGG
GFLVLLRRQDLRQDALEGNSGETAPAAGDAFAVLPRMKPEPIASHLEREVGRLKARLRQT
VEQYEVSTEELKASNEELHAMNEELHAAAEELDTSREELQSINEELTTVNQELKNKVDDL
GHANSDIVNLMDATAIATVFLDRNLRVMRFTPSAATIFKLIASDTGRPLSDLVTGLDYPE
LSDDARAVLRSLQPSEREVGDARGNWYLARARPYRTIEDVIAGVVLSFVDITERKVAQES
LRQSQERFSAIVNQASVGVAQMRLDGEITFANTCYRALTGYGDDELLGRRVLDFVHPADL
PATQSLFEQLAAQGKPFQAENRIVRKNGEVMWLHKSVTVLTDGGGRPDSALIVCTDVSER
KLAEEALRESQERMRLMLENAIEYAIFSVDMERRVTSWNAGAERLLGYSEQEILGRSADL
IFTEEDRAAGAPVEEARTALAEGRAADDRLHQRKDGSRFWASGALMPMHDGEGRSIGLVK
VLRDQSKQRAAQQELEQSRGELLSALRANEAARRALETADAAKDRFLAVLSHELRNPLAS
ISGAAELLAPESLATQDQARAARVIRRQASVMKVMLGELLDVSSLRQGRLALSRERISAQ
AIADAALETVRPLIEHGRHTLDLDIAEEEIALDADPIRLSQVLSNLLSNAAKYTPAPGRI
ALSVRAEARDAVFEVTDDGIGMEPESIETMFEMFVQSEHAHARANGGLGIGLALVRNIVE
LHGGTVTGHSEGLGRGCRFTVRIPTARPAAAMSTLAPEAGGEAPVRLQRLLLADDNVDAL
WGLEQMLSRAGFEVETVNNGIDALRVAQALRPDAAVLDIGMPGMDGHEVARRIRAEPWGR
ELVLIAATGWGQPADRAAALAAGFDEHVAKPVTASDLQRLLRAHEAGRQARRLPDA

NT seq 4671 nt +upstreamnt +downstreamnt
ttgaacgattccacgcccgacagggccgaagaagaaggcgccacgcagttggacgatgcg
gtgccgtcgttcggctatggcctcctgcccctggtgggcctggccggcgccgcggggagc
gtcgaggcgctgtgcgcgttcctgcagggcaccgcgtccgattcgggcatggccttcgtc
gccgtgctgaacctgtccgaccgcgggccgaaggcatttgccgatctcgtccagacgctg
cgcgcggcgacggcgctgcctgtggtgccggtcgaccagcgggtgcgcctcgcacccgac
accctccatgtgctgccgcccggcaggccgccgcacatgcgcggcaatttcatcgaaccg
gccgagctgccggcgggcggcgggcgccacctgccggcggaccttttctttcgcacgctc
gcggattcgcatggcccgcatgcgacggcggtggtgctctcggggccggacggcgacggc
accatcggcatcaagcgcgtcaaggagcgcgggggcctgaccatcgttcaggacccgcgc
gagtcggccgaggggggcatggcgcagacggccctcgcgaccggcatggtcgactgggtg
ctgccggcgcgcgagatgggcacgcgcatcgccgcgtactaccgcctcgaatcgcagctg
cgcctgccgcccgaacagccgccggcgcacgacgccgcgctcgccgaggccgcgctgacg
gaccccggcgaagcggccttgcgcgaggtgctggccttcgtgcgcgaccgcaccggccgc
gatttcgacgactacaagcgcgccacggtgctgcggcgcctcggccggcgcatgcaggtg
aacggcgtgggcaacctgcaggcctacctcgactgcctgcgcacgcggcccggcgaggcg
ggcgcgctggtgcacgacatgctcatcagcgtgaccaacttctttcgcgacagcgacagc
ttcgccgcactggaagcgcgcgtgccggagctctttcgccacaagggcccggacgacacg
ctgcgcgcctgggtggtggcctgcgccactggcgaggaggcgtattcgatcgcgatgctg
ctgagcgaacacgcgcgcacgctggagagcccaccgtccatccaggtcttcgcgaccgac
ctggacgaggaggcggtgcgagccgcgcgcgacggcatctacccgctggcggccgaggcc
gacctgggcgaagagcgcatccggcagttcttcgtgcgcgagccgcgcggcctgcgggtg
cggcgcgaactgcgcgagatggtgctgttcgcggtgcacgacgtgctgcgcgacgcgccg
ttcgcgcgcatcgacctggcgacctgccgcaacctgctcatctacctgaaccgcgatgcg
cagacgcgcgtgctggagacgctgcacttcgcgatgtacccgggcgcgccgctgttcctc
ggcgtctcggaggcggcggacggcgacgggcgcctgttcgccgtggccgacaagccgcac
cgcatctacctgcgctgccagtcgcgcgcgggcgcaccggtgccgccccggcccgtcggc
ccgccaagagcggccgcggcgcggcactcgcaggcggtgatccccctggcggcgattgcg
ccgcccgtcgcaccgcaggccatgctgccgaccctgcgcggcgggcaaaccatgacctgg
gccgaaatgcacctgcagctggtcgacctgctggcgccgccctcgatcctggtggacgcc
gggcacgagatgctgcacatctcgcccgcggccacggcgttcctgtacttcggcggcggc
gagccttcgcgcaacgtgatgcaggccatcgtgcccgacctgaaggccgaactgcagacg
gcgctccatcacgcgcacgagcggcacgagcctgtggaggtggcgccggtgcgggcgcgc
atcgccggcggcgaggtggaggtgaccgtcagcgtgcggccggtggaggcgttcggcggc
ggcttcctggtgctgctgcgccgccaggacttgcgccaggacgcgctcgaggggaattcc
ggcgaaaccgcccctgcggccggcgacgccttcgccgtcctgccgcgtatgaagcccgag
cccatcgccagccacctggagcgcgaggtcggacgcctgaaggcgcgcctgcgccagacg
gtggagcagtacgaggtctcgaccgaggagctcaaggcgagcaacgaagagctgcacgcc
atgaacgaggaactgcatgcggccgccgaggagctggacaccagccgcgaggagctgcag
tcgatcaacgaagagctgaccacggtcaaccaggaactgaagaacaaggtcgacgacctg
ggccatgccaacagcgacatcgtgaatctgatggacgcgacggccatcgccaccgtgttc
ctggaccggaacctgcgcgtgatgcgcttcacgccgagcgcggcgaccatcttcaagctg
atcgcgagcgacacggggcgcccgctctcggacctggtcaccgggctggactaccccgag
ctctcggacgatgcgcgcgccgtgctgcgctcgctgcagccttcggagcgcgaagtgggc
gacgcgcggggcaactggtatctggcgcgcgcgcggccctaccgcaccatcgaggacgtg
atcgccggcgtggtgctgagcttcgtggacatcaccgagcgcaaggtcgcacaggaatca
ctcaggcaatctcaggagcgcttcagcgccatcgtgaaccaggcctcggtgggcgtggcg
cagatgcggctggacggcgagatcaccttcgccaacacctgctaccgcgcgctcaccggc
tacggggacgacgagctcctgggccggcgtgtgctcgatttcgtgcacccggcggacctt
ccggcgacgcagtcgctcttcgagcagctcgccgcgcagggcaagccgttccaggccgag
aaccgcatcgtgcgcaagaacggcgaggtcatgtggctgcacaagagcgtgacggtgctc
accgacggcggcggccggcccgactcggcgctgatcgtctgcaccgacgtgagcgagcgc
aagttggccgaggaagcgctgcgcgagagccaggagcgcatgcggctgatgctggagaac
gcgatcgagtacgccatcttctcggtcgacatggaacgccgcgtgacgagctggaacgcc
ggcgccgagcggctgctgggctacagcgagcaggagatcctcggccgctcggccgacctg
atcttcaccgaggaagaccgcgccgccggcgcaccggtcgaggaggcccgcaccgcgctc
gccgaaggccgcgcggcggacgaccggctgcaccagcgcaaggacggctcgcgcttctgg
gccagcggtgcgctcatgccaatgcacgacggcgagggcaggtcgatcggactggtgaag
gtgctgcgcgaccagagcaagcagcgcgccgcgcagcaggaactggagcaaagccgcggc
gagctgctctccgcgctgcgcgccaacgaggccgcgcgccgcgcgctggaaacggccgac
gcggcgaaagaccgctttctggcggtgctctcgcacgagctgcgcaacccgctcgcctcg
atcagcggcgcggccgagctgctcgcgcccgaatcgctcgccacgcaggaccaggcacgt
gccgcccgcgtgatccgccgccaggcctcggtcatgaaggtcatgctgggcgagctgctc
gacgtgtcgagcctgcggcagggccggcttgcgctcagccgcgagcgcatcagcgcgcag
gccattgcggatgcggcgctggagacggtgcggccgctcatcgagcacgggcgccacacg
ctcgatctggacatcgccgaggaagagatcgcgctggacgccgacccgatccggctcagc
caggtgctgtcgaacctgctgtcgaacgccgccaagtacacgcccgcgccggggcgcatc
gcgctgtcggtgcgggccgaggcgcgcgacgcggtgttcgaggtgaccgacgacggcatc
ggcatggagcccgagtcgatcgagacgatgttcgagatgttcgtgcagagcgagcatgcg
cacgcgcgcgccaacggcggcctgggcatcggtctggcgctggtgcgcaacatcgtggag
ctgcacggcggcaccgtcaccggccacagcgaagggctgggtcggggctgccgcttcacg
gtgcggattcccaccgcgcggccggccgcggccatgtcgacgctcgcgcccgaagccggc
ggcgaggcgccggtgcggctgcagcggcttctgctcgccgacgacaacgtcgatgcgctc
tggggcctggagcagatgctctccagggcgggcttcgaggtcgagacagtgaacaacggc
atcgatgcgctgcgcgtggcacaggcgctgcgccccgatgcggcggtgctcgacatcggc
atgcccggcatggacggccacgaggtggcgcgccgcatccgcgccgaaccctggggccgc
gagctcgtgctgatcgccgccaccggctggggccagccggccgaccgggccgcggcgctg
gcggcggggttcgacgagcatgtcgccaagccggtgacggcctccgacctgcagcggctg
ctgcgcgcgcacgaggcgggccgccaggcacgccgtttgcccgatgcatga

All links

Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-VPE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (34)   
   Pfam (34)   
All databases (46)   

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