KEGG   Variovorax paradoxus EPS: Varpa_5939
Entry
Varpa_5939        CDS       T01392                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K05591  ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
Organism
vpe  Variovorax paradoxus EPS
Brite
KEGG Orthology (KO) [BR:vpe00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:vpe03009]
    Varpa_5939
Enzymes [BR:vpe01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     Varpa_5939
Ribosome biogenesis [BR:vpe03009]
 Prokaryotic type
  rRNA helicases
   Varpa_5939
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII AAA_22 CMS1 P-loop_SecA BON
Other DBs
NCBI-ProteinID: ADU40091
UniProt: E6UYW6
Position
6459379..6460830
AA seq 483 aa
MTTTNPTADGSQAQVSTENGFATLALSPQMLANLTQLGYTQMTAIQAAALPPALLGKDLI
AQAKTGSGKTAAFALALLANLNARRFAIQAMVLCPTRELADQVTTEIRRLARAEENIKVV
TLCGGVALRGQIASLEHGAHIVVGTPGRIMDHLERGNLDLSALNTLVLDEADRMLDMGFF
EDIVKVARQCPKERQTLLFSATYPEGIAKLAQQFMKSPQQITVQAQHEGSKIRQRWYQVK
DSERLHTVSLLLDHFRPVSTLAFCNTKQQCRDLVEVLQAQGFSALALFGELEQRERDQVL
VQFANRSCSVLVATDVAARGLDISHLEAVINVDVTPDSEIHIHRVGRTGRVGQSGDAEGL
ALNLASMNEMGSVGKIEQLQGRESEWHELAELTPGKGAPLQPPMATLQIVGGRKEKIRAG
DVLGALTGDCGYTKDQVGKINVNEFSTYVAVDRAIAAEAAHKLGSGRVKGKSVKVRLLTL
QDQ
NT seq 1452 nt   +upstreamnt  +downstreamnt
atgactacgaccaatcccacagccgacggctcccaagcccaggtttcgaccgaaaacggc
tttgccaccctggcgctctcgccccagatgctggccaacctcacccagctcggctacacg
cagatgacggccatccaggccgccgccctgccgccggcgctgttgggcaaggacctgatc
gcccaggccaagaccggcagcggcaagaccgccgcctttgccctcgcgctgctcgccaat
ctcaacgcacgccgcttcgccatccaggcgatggtgctgtgcccgacgcgcgagctggcc
gaccaggtcacgaccgaaatccggcgcctggcgcgcgcggaagaaaacatcaaggtggtc
acgctctgcggcggcgtcgcgctgcgcggacagatcgccagcctggagcacggcgcgcac
atcgtcgtgggcacgccgggccggatcatggaccacctggagcgcggcaacctcgacctc
tcggcgctcaacacgctggtgctcgacgaagccgaccgcatgctggacatgggcttcttc
gaagacatcgtgaaggtcgcgcgccagtgcccgaaggaacgccagacgctgctgttctcg
gccacgtaccctgaaggcatcgccaagctcgcgcagcagttcatgaagagcccgcagcag
atcacggtgcaggcacagcatgaaggcagcaagatccgccagcgctggtaccaggtgaag
gacagcgagcggctgcacaccgtgagcctgctgctcgaccatttccgccccgtcagcaca
ctggccttctgcaacaccaagcagcagtgccgcgacctcgtcgaagtgctgcaggcgcag
ggcttcagcgcgctggcgctcttcggcgagctcgaacagcgcgagcgcgaccaggtgctg
gtgcagttcgccaaccgcagttgctccgtgctcgtggccaccgacgtggcggcgcgcggc
ctggacatctcgcacctcgaagcggtgatcaacgtcgacgtgacgcctgattcggaaatc
cacatccaccgcgtcggccgcaccggtcgcgtgggccagtcgggcgatgccgaagggctc
gcgctgaacctggccagcatgaacgagatgggcagcgtcggaaagatcgagcaactgcag
ggccgcgagtccgaatggcacgaactggccgagctcacgcccggcaagggcgcgccgctg
caaccaccgatggccacgctgcagatcgtcggcgggcgcaaggaaaagatccgcgccggc
gacgtgctgggtgcgctcaccggcgactgcggctacacgaaggaccaggtcggcaagatc
aacgtcaacgagttctcgacgtatgtggcggtggaccgcgccatcgccgcggaagcggcg
cacaagctcggcagcggccgggtcaagggcaagtcggtcaaggtgcgcctgctgacgctg
caggaccagtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (16)   

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