KEGG   Vibrio parahaemolyticus O1 Kuk FDA_R31: M634_02960Help
Entry
M634_02960        CDS       T02761                                 

Definition
5-hydroxymethyluracil DNA glycosylase (EC:3.2.2.23)
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
vpf  Vibrio parahaemolyticus O1:Kuk FDA_R31
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:vpf00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    M634_02960
Enzymes [BR:vpf01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     M634_02960
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     M634_02960
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
UniProt: 
Position
I:594499..595308
Genome map
AA seq 269 aa AA seqDB search
MPELPEVEVSRMGISPHMVGQTIKAFVFRTPKLRWDIPQELKLLEGQVIRAIHRRAKYLL
IETDAGTAIVHLGMSGSLRVLDADFPAAKHDHVDLKLTNGKVLRYNDPRRFGAWLWCAPG
ESHAVLDHMGPEPLTDAFNSEYIADKAQGKRVAVKQFIMDNKVVVGVGNIYANESLFKSR
ILPTRQAGQVTPQEWVLLVENIKATLKIAINQGGTTLKDFAQADGKPGYFAQELLVYGKA
GEPCPKCGEPLQELKIGQRNTFFCNECQQ
NT seq 810 nt NT seq  +upstreamnt  +downstreamnt
atgcctgaattaccagaagttgaagtaagccggatgggtattagtccacatatggttgga
caaacgattaaggcatttgtttttcgcacacccaaactgcgctgggatatcccgcaagag
ctgaaattgcttgaagggcaagtgattcgagccattcatcgtcgcgcaaagtatttgctc
atagaaacggatgcaggaactgctattgtgcaccttggaatgtcaggctcgttacgtgtg
ttggatgctgatttccctgcggctaagcacgatcatgtcgatctcaaacttacaaatggt
aaagtgctgcgttataacgaccctcgacgctttggtgcttggctatggtgcgctcctggt
gagtcccatgcggtacttgatcatatgggaccagagcctctaactgatgcgtttaatagc
gagtacattgctgataaagcgcaaggtaagcgtgtcgcggtaaagcagttcatcatggac
aacaaggtcgtggtcggtgtggggaatatttacgccaatgaatctctgtttaaatctcgt
attctcccaacccgacaagcaggtcaagtgacaccccaagagtgggtgctgttagtggaa
aacatcaaagccacgctaaaaattgccattaaccaaggtggtacgactttaaaagacttc
gctcaagccgatggcaagcctggttattttgctcaagaacttttagtgtatggaaaagcg
ggtgagccttgcccaaaatgtggagagccgcttcaagagctaaaaattggccaacgtaat
accttcttctgtaatgagtgtcagcaatag

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