KEGG T03116: VPUCM

Vibrio parahaemolyticus UCM-V493: VPUCM_0684

Entry

VPUCM_0684        CDS       T03116

Name

(GenBank) Polyribonucleotide nucleotidyltransferase

K00962

polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]

Organism

vph Vibrio parahaemolyticus UCM-V493

Pathway

vph03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:vph00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VPUCM_0684
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vph03019]
    VPUCM_0684
   03016 Transfer RNA biogenesis [BR:vph03016]
    VPUCM_0684
Enzymes [BR:vph01000]
2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     VPUCM_0684
Messenger RNA biogenesis [BR:vph03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     VPUCM_0684
Transfer RNA biogenesis [BR:vph03016]
Prokaryotic type
  tRNA degradation factors
   VPUCM_0684

SSDB

Motif

Pfam:

RNase_PH PNPase RNase_PH_C S1 KH_1 KH_2 S1_2 DUF3016 SLS1_KH2 DUF5813

Other DBs

NCBI-ProteinID:

AHI98642

Position

1:745432..747567

AA seq 711 aa
MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVAGQDFFPL
TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS
VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSQTELNASRLDLVV
AGTESAVLMVESEADNLTEEEMLAAVVFGHDQQQVVINAINEFKAEVATPAWDWVAPEEN
TALKTKIAELAEAKLVEAYQITEKMARYDRIHEIAAEVNEALLAQDPEADTKEIHTIFHD
LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ
RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD
EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS
DILGDEDHLGDMDFKVAGTSTGVTALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE
ALAGARDDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA
TEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAEKRV
EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVEKPAEEAAAEAPAAKEE

NT seq 2136 nt +upstreamnt +downstreamnt
atgttcgaaaaaccagttgttaaaacgttccagtacggtaaccacacggttactctagaa
actggcgttatcgcacgtcaagctacagcagcagttatggttacaatggacgatacagca
gtattcgtttcagttgttggtaaaaaagaagcagtagcgggtcaagatttcttcccacta
actgtaaactaccaagagcgtacttacgctgcaggtaagatcccaggtggcttcttcaaa
cgtgaaggtcgtccatctgaaggcgaaacgctaacagctcgtctaatcgaccgtccaatc
cgtccactattcccggacgcgttcaaaaatgaagtgcaagttattgcaacggttgtatct
gtaaacccagacgttcaaccagatatcccaacaatgattggtacatctgcggctcttgcc
atctctggtattccattcaatggtcctatcggtgcagcacgtgttggtcacatcgatggt
cagctagttcttaaccctagccaaactgagctaaacgcatcgcgtctagatctagtggtt
gcaggtacagagtctgcggtactaatggttgagtcagaagctgacaacctaactgaagaa
gaaatgctagcagcagttgtgttcggccacgatcaacaacaagttgtaatcaacgctatc
aacgagttcaaagctgaagttgctactccagcttgggattgggttgctccagaagaaaat
acagcacttaagactaagattgctgaacttgctgaagctaagcttgttgaggcttaccaa
atcactgagaaaatggctcgttacgaccgcatccatgagattgcagcagaagtaaacgaa
gcactgcttgctcaagatcctgaagcggatactaaagaaatccacacaatcttccacgat
ctagagaagactgttgtacgtcgtagcatcatcgcgggtaaccctcgtatcgatggtcgt
gagaaagacatggttcgtgcgctagacgtacgtactggtgttcttccacgtactcacggt
tctgcactgttcactcgtggtgaaactcaggccctagttactgcgactctaggtactcaa
cgtgatgcacaaatcatcgatgagctaactggtgagcgtaaagatcacttcctactacac
tacaacttccctccatactgtgtgggtgagactggtttcgtaggttctcctaagcgtcgt
gaaatcggccacggtaaactggctaagcgtggtattgcagctgtaatgccatctgttgac
gagttcccatacacagttcgcgttgtatcagaaatcacggaatctaacggttcatcttca
atggcgtctgtatgtggtacatctctagcacttatggatgctggtgtgccaatcaaagca
tctgttgcgggtatcgcgatgggtcttgtgaaagaaggcgatgactttgttgttctttct
gacatccttggcgacgaagaccacctaggtgacatggactttaaagtagcaggcactagc
actggtgttactgcacttcaaatggacatcaagatcgaaggtatcactaaagagatcatg
caaattgcgcttaaccaagcacaaggcgcacgtaagcacatcctatctgtaatggatgaa
gcgcttgctggtgctcgtgacgatatctctgagttcgctccgcgtatccacacaatgaag
atcagcgcagagaagatcaaagacgttatcggtaaaggtggtgcagttatccgtgctcta
actgaagagactggtacaactatcgaaatcgaagatgacggtacaatcaagattgcagca
actgaaggtgcagcagcgaaagaagctatccgccgtatcgaagagatcactgctgaagtt
gaagtaggccgtatctacactggtaaagtggctcgtctagctgactttggtgcgtttgta
acggttctaccaggtaaagatggtctagtacacatttctcaaatcgctgaaaaacgcgtt
gagaaagtgtctgactacctaactgaaggtcaagaagttcaagttaaagttcttgaaatc
gaccgtcaaggccgtgtacgtctaagcatgaaagaagcggtagagaagcctgctgaagaa
gcagcggcagaagcaccagcagcgaaagaagagtaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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