KEGG   Vibrio parahaemolyticus UCM-V493: VPUCM_0690
Entry
VPUCM_0690        CDS       T03116                                 
Name
(GenBank) diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
  KO
K20965  c-di-GMP phosphodiesterase [EC:3.1.4.52]
Organism
vph  Vibrio parahaemolyticus UCM-V493
Pathway
vph05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vph00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   05111 Biofilm formation - Vibrio cholerae
    VPUCM_0690
Enzymes [BR:vph01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.52  cyclic-guanylate-specific phosphodiesterase
     VPUCM_0690
SSDB
Motif
Pfam: EAL GGDEF PAS_4 PAS_8 PAS_9 PAS
Other DBs
NCBI-ProteinID: AHI98648
Position
1:complement(752699..754738)
AA seq 679 aa
MPSQQLQHWFATLTSNSPFFFAILDKKHNYRMVSDRYCDIAGLNHEEIIGLNDCQVLGEQ
FYKKLAPYYQRAFKGVHVEAEITLDETDLETSLHFSLSPVYEGNEVRFVVFHAVDTSEKQ
ILVRSLEEAENKFAKLTQLLPDGLLLIEDDTIISANPASARLLGLNSPHELLGEELSRLF
IDENTKKVFSHRLSTLISDKPFVCLTSARCGFERKVQLHADSTAILGSESQIILIQDADD
TPKHLSSASSEDSHIDSLTKLYNRFGFTKRLEQLIKSQTPLLVFYLDIDNFKNINDSLGH
HIGDKVIQEVSARLKRLLPNQAIIGHLGGDEFGIILPEPENSRMAEVLSDRIISLINQPF
DLHHFSKRLACSIGSVRYPEDGQDARILLQNADTAMYEAKDRGRNRLIKFNDQMNKEARM
RLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWKHPVEGYISPGSFIPVAER
AGLIEHLGRVVMRDVFNTVKRWKQQGILPGRVAINLSPEQFGNPQLIDFMEKLLRTTELD
PSCITFELTESAVMSDSEHTLQMLNAIKKLGFALSIDDFGTGYSSLSYLARFPIDELKID
RAFINDIDALPKQVTVIENIINLGKSLELTVVAEGVETHQQATLLSNLQCNSIQGFHFYR
PQPKHEIEELFVQNRRHKN
NT seq 2040 nt   +upstreamnt  +downstreamnt
atgccttcccagcaattacaacattggtttgccacgctaacctcaaatagccctttcttt
tttgccattcttgataaaaaacacaattatcgaatggtgagtgaccgctattgcgatatt
gcaggcttaaatcatgaagaaatcatcgggttaaacgattgccaggtgctaggtgagcag
ttttataagaagctggcaccttactaccaacgcgcattcaaaggcgtgcatgtcgaagct
gaaattaccttagatgaaaccgatttagagaccagccttcactttagtttgtcaccagtg
tatgaaggtaacgaggtacgtttcgtggtgtttcacgccgtcgacacctccgaaaagcaa
atacttgtccgctctctggaagaagccgaaaacaaatttgccaagctgacccaactattg
cccgatggcctgctgctgattgaagatgacaccatcatctcagcaaaccctgcctcggct
cgtttgcttgggcttaactcccctcacgagctgctcggtgaagagctctctcgtctgttc
atcgacgaaaacaccaaaaaagttttcagtcaccgactcagcacgcttatttcggacaaa
ccgtttgtttgcctgactagcgcgcgttgcggatttgagcgcaaagtccaattgcatgcg
gactcgacggcaattctaggcagtgaatctcaaattattcttatccaagatgcggatgac
acaccaaaacacttgtcgtcggcctccagtgaagattctcatatcgactctttaaccaaa
ctgtataaccgatttggtttcaccaagcgcctagaacaactgatcaaaagccaaacaccg
ctattggtgttttacctcgatatcgataactttaagaacattaatgactcgctgggtcat
cacatcggtgacaaagtcatccaagaagtttctgcacgtttaaaacgactgctgccaaac
caagcgatcatcggccatcttggcggtgatgagttcggcatcatccttcctgagccagaa
aactcgcgcatggcagaagtgttatcagatcgcattatttctttgataaaccaacctttt
gatcttcaccacttcagtaaacgtcttgcctgctcaattggtagcgtccgctatccggaa
gatgggcaggatgctcgtatcttgctacaaaatgccgataccgcaatgtacgaagcgaaa
gatcgcgggcgaaaccgtctgatcaaattcaatgaccaaatgaacaaagaagcgcgtatg
cgtttgtggctcgaaatcgaactgcaaaaagccctgcagcaaaatggtcttgaagtttgg
tatcaacccaaagtgaacgcccgtgatttcagtatcaatggcgcagaggctttagtacgt
tggaaacatccggttgagggctacattagcccaggatcatttattcctgtggcggaacga
gcaggtttgattgagcatctgggtcgcgtggtgatgcgtgatgtattcaacaccgtaaaa
cgctggaaacaacaaggcattttgccgggtcgcgtcgcgatcaacttgtctccagaacag
tttggcaaccctcagttgatcgactttatggagaagctgctgcgcacaaccgaacttgat
ccaagttgcatcacttttgagctaacggaaagcgcggtgatgagtgacagcgaacatacg
ctgcaaatgctgaatgcgattaaaaagctgggctttgctttatcgatcgacgactttgga
actgggtattcgtcactgtcgtatttagctcgtttcccgattgatgaactaaaaatcgac
cgtgcattcattaatgacattgatgccctgccaaaacaggtgaccgtcatcgagaacatc
atcaacttgggcaaatctttggaactaacggtcgttgcagaaggcgtagaaacgcatcag
caagctactttgctttccaaccttcaatgcaactcgattcaaggttttcatttctaccga
cctcagccaaaacatgaaatcgaagagttgtttgtgcaaaaccgccgccacaaaaactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (14)   

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