KEGG   Vanderwaltozyma polyspora: Kpol_1045p29
Entry
Kpol_1045p29      CDS       T01049                                 
Name
(RefSeq) hypothetical protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
vpo  Vanderwaltozyma polyspora
Pathway
vpo03018  RNA degradation
vpo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vpo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Kpol_1045p29
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Kpol_1045p29
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vpo03019]
    Kpol_1045p29
   03041 Spliceosome [BR:vpo03041]
    Kpol_1045p29
Messenger RNA biogenesis [BR:vpo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     Kpol_1045p29
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     Kpol_1045p29
Spliceosome [BR:vpo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    Kpol_1045p29
SSDB
Motif
Pfam: LSM SM-ATX Hfq
Other DBs
NCBI-GeneID: 5546312
NCBI-ProteinID: XP_001645901
UniProt: A7TI36
AA seq 193 aa
MLPLYLLTNAKGQKITIELKNGETIKGVLTNVDNWMNLTLSDVIQYDSDALNNGAEKPEG
LSVPEIYLRGTYIKYINLQDDIIENVRQQINSSSNNNNSGSGNTGSGGGYGGSGQGKRQN
RYNSGNSGNYSHSYRRGGNKRNYNQGSGNRRSYYDKVNNNNSNNNNGMGGYVQHHQSGPQ
QPQFNENTASVQF
NT seq 582 nt   +upstreamnt  +downstreamnt
atgttacctttatatttgctgacgaatgcaaagggccaaaaaattactattgagttgaaa
aatggagaaactataaaaggtgtattgaccaatgttgataattggatgaatttgacttta
tctgatgtcattcaatatgatagtgatgctctaaataacggtgctgagaagcccgaaggt
ttgagtgtgccagagatttatttaagaggtacttatattaaatatattaatttgcaagat
gatattattgaaaatgtgagacaacagatcaatagcagtagtaataataacaactctggt
agtggcaatactggtagtggtggtggatatggtggatctggccaaggcaaaagacagaat
agatacaatagtggcaacagtgggaattattctcatagttatcgtagaggtggtaataaa
agaaattataatcaaggttcaggtaaccgtcgttcttattatgataaagttaataataat
aatagtaataataataatggaatggggggttatgttcaacatcaccaatctggtcctcaa
caaccacagtttaatgaaaatactgcatcggttcaattttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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