KEGG   Vibrio qinghaiensis: CCZ37_05340
Entry
CCZ37_05340       CDS       T05259                                 
Name
(GenBank) exodeoxyribonuclease I
  KO
K01141  exodeoxyribonuclease I [EC:3.1.11.1]
Organism
vqi  Vibrio qinghaiensis
Pathway
vqi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vqi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    CCZ37_05340
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vqi03400]
    CCZ37_05340
Enzymes [BR:vqi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     CCZ37_05340
DNA repair and recombination proteins [BR:vqi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     CCZ37_05340
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     CCZ37_05340
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      CCZ37_05340
SSDB
Motif
Pfam: Exonuc_X-T_C RNase_T
Other DBs
NCBI-ProteinID: ASU22044
UniProt: A0A223MX15
Position
1:complement(1141036..1142460)
AA seq 474 aa
MRQEHPPTFFFLDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPADYLPSPE
AALITGITPQKAVAQGLPEPEFIAKIHQQLATPNTTSLGYNSIRFDDEVTRYTCYRNFID
PYAWSWQNGNSRWDLLDVMRACHALRPEGINWPENDEGFTSFKLEHLSVANGIEHANAHD
AMADVIATIELAKKVKAAQPKLFDYFFNMRHKRKLNDLIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVVDLAKNPQPLIDLSSEELHQRLYTKREELAEDELPVPIKLV
HLNKCPILAPAKTLTAENAHHIGVDRNLCLEHLALIKQYPEIREKLIGIYTIEREYKHSD
DVDTQLYDGFFSPADKAAMEIIRQADPVNLAALDISFSDKRIEPLLFRYRARNYPLTLSD
EEQRRWATHCRDYFESHLGEYMLNLENLVHTHSSDEKKMAILKSVYRYVEDIAS
NT seq 1425 nt   +upstreamnt  +downstreamnt
atgcgacaagagcacccgcctactttctttttcctcgactatgagacgtggggagtcaac
cctgcgaaagatcgtccgagccaatttgcgggcgttcgcaccgatatggattttaatatt
attggcgaaccactggtcatctattgccaaccaccagcggactatttgccttctccagaa
gcggcgcttattacgggtatcacaccacaaaaagcggtggcccaaggcttgccagagcct
gaatttatcgccaaaattcatcaacaactcgccacacccaacaccaccagtcttggttac
aacagtattcgttttgatgatgaagtaacgcgttacacttgctatcgtaatttcattgat
ccgtatgcttggagctggcaaaacggcaattcacgctgggatttacttgatgtgatgcgc
gcctgccatgcgctacgcccagaaggcatcaactggcccgaaaatgacgaaggctttacc
agttttaagctggagcatctctcagttgccaatggcatcgaacatgcgaatgcccacgat
gctatggccgatgttatcgccaccattgagctagccaaaaaagtaaaagccgcccaaccc
aagttgtttgattacttttttaacatgcgccataaacgcaaactcaatgatctgattgat
atcgtcaacatgacacctttaatgcacgtatcgggtatgttaggccgagaatgccaatat
accagttggatcgtgccgattgcttggcatcccaccaatcaaaatgcggttattgttgtg
gaccttgccaaaaaccctcaacctctgatcgatttaagcagcgaagaactgcatcaacgt
ctatataccaaacgcgaagagttggcagaagatgaattgccagtgcccatcaaattagtg
catctcaataaatgccctatccttgcgccggccaaaacattaacggccgaaaatgcacac
catatcggggtcgatagaaacctgtgccttgaacacttagcgctcatcaagcagtaccct
gagatcagagaaaagctgattggcatctacacaattgagcgagaatataagcacagtgac
gatgtcgatactcaactctacgacggtttcttctctccagccgacaaagcggcgatggag
atcattcgccaagctgacccagtcaatctcgccgcattagacattagttttagcgataag
cgcatcgaacccttgctgtttcgctaccgcgctcgaaattacccattgacattaagtgac
gaagagcaaagacgttgggcaactcactgtcgtgattatttcgaaagccaccttggagag
tacatgctcaatttagagaacttagttcacacccacagcagtgacgaaaagaaaatggct
attttaaaatccgtttaccgttatgtggaagacatcgcaagttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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