KEGG   Vigna radiata (mung bean): 106762256
Entry
106762256         CDS       T04126                                 
Name
(RefSeq) DNA ligase 4 isoform X1
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
vra  Vigna radiata (mung bean)
Pathway
vra03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:vra00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    106762256
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vra03400]
    106762256
Enzymes [BR:vra01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     106762256
DNA repair and recombination proteins [BR:vra03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     106762256
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 BRCT DNA_ligase_A_C PTCB-BRCT RNA_ligase DNA_ligase_IV
Other DBs
NCBI-GeneID: 106762256
NCBI-ProteinID: XP_014501536
UniProt: A0A1S3U6A3
Position
5:complement(3297154..3311752)
AA seq 1173 aa
MATEQTKFSVLCSLFTWTQRSKSAAKKRSKFRKFLDAFCIDRNFFPAIRLILPNLDRERG
SYGLKESVLATSLIDALGISRDSPDALRLINWRKGGAATGATAGNFALVAAEVLHRRQGT
ASGGLTIRELNELLDRLASGENRAEKILVLSTLIQKTNAQEMKWIIMIILKDLKLGISEK
SIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATEAW
KKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFIDHSEYAHAMSDIIIQNILVDRCIL
DGEMLVWDTSSKRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYFGDTSVIHQSLKER
HEILCKVVRPMKGRLEILVPNAGINSHLTSGEPCWSFIAHKVDEVEKFFKETIENRDEGI
VLKDRSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGQVAQFLVGLAER
QSPNAQPTRFISFCRVGTGLSDEELDVVVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERP
DVWVDSPEKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWNECLDVQSFIELV
HSSNGTTQRDTEYGSKQDSKPKRMKSSTRGDKKNMSIVPSHLIQTDISSIKGGTLIFSNM
MFYFANVPSSHSLESLHKIIAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHGDIIHY
SWVLDCYEQKKLVCLQPKYFLFLSELTKKKFREEIDEFSDSFYLDLDLGDIKQLLSNISK
SEDVSTVDHYRKKYCPKDKWSFFCGCSIYFHTAIPSLKGDWHYILQLALRRFKLEVLMGG
GKVTSNLTSATHLVAFLVPGCLTDFEQILSSFTSVERKILRSKRLYIVNSQWLEDCSDSS
QRLPEDSYSLKPWGIEETTAEDCEQDLALEAHQCGDNTQDQNTSFSDKGNRQRSEQVACE
DSMAFLSGEKGIKRKRGRPVGIGIKNVKPIGKKTRKARPQNVKKPTKICEYESSDESDFR
DKQEIDTRAGSLNFYKKHSEPKENEEQENVQVSRTVESSEQNKVDNKLEDLKDNDHERML
IPEIEMTDRYNDQNNEVKEKLDFSADPLQAMLFDMIPSLGTQKVEQPMNLSVREEKLAKT
SNAETSNAETEPITTKKNKVSFMDAANELLKDW
NT seq 3522 nt   +upstreamnt  +downstreamnt
atggcgacggagcaaaccaaattcagcgtgttgtgcagcctcttcacgtggacgcagcgg
agcaagtcggcggcgaagaagcgctccaagttccgtaagttcctcgacgccttctgcatt
gaccgcaacttcttccccgccattcgcctcattctccccaacctcgatcgtgagcgcggc
tcctatggcctcaaggagtccgttctcgccacctccctcatcgacgccctcggcatctcc
cgtgactcccccgatgccctccgactcatcaattggcgtaagggtggcgctgccaccggc
gctacagcaggaaattttgccctcgtcgccgccgaggtgctgcaccgcaggcaagggacc
gcttcgggagggttgacgataagggagttgaatgagttgcttgaccggttggcttccggt
gagaacagggctgagaaaattttggttctttctacccttatccaaaagacaaatgcacag
gaaatgaagtggattatcatgataatcctgaaagatctaaagctgggaattagtgaaaaa
agcatttttcatgagttccatcctgatgcagaagacttgtttaatgttacctgtgactta
aaactagtatgtgaaaagctaagggatcggaatcagcggcataagcggcaggatattgaa
gttgggaaagctgtgcgcccccaattagctaagagagttgctaatgcaactgaagcatgg
aagaagcttcatgggaaggaagtggttgttgagtgcaaatttgatggcgaccgaattcaa
attcataaaaacggaactgagatacattttttctcaaggaactttatagatcattctgaa
tatgcacatgcaatgtcagatatcataatacaaaatattcttgtagataggtgtatcctt
gatggtgaaatgttggtgtgggacacatcctcaaaacgctttgctgagtttggctcaaat
caggaaatagccaaggcagcaagagatggacttgatagtgacagacagttatgctatgtt
gcgtttgatatcctttattttggagatactagtgtgattcaccaatctttgaaggaaaga
catgagattttatgtaaagttgttaggccaatgaagggacggttggaaattttggtacct
aatgctggtatcaacagccatcttacttcaggtgaaccttgttggtcatttattgctcat
aaagttgatgaagttgagaagtttttcaaggaaaccattgaaaatagagatgagggaatt
gttttaaaagaccgcagctctaagtgggaacctagtgatcgtagtggaaagtggctaaaa
ttgaagcccgaatacattcaagctggctctgatttggatgtacttatcataggtggctac
tatggttctggacgacgtggaggacaggttgctcaattcttggttggccttgcagaacgt
caatctccaaatgcacaacctacgcgatttatatccttttgcagagttggcactggactc
tctgatgaggagcttgatgttgtagtaaccaaactaaaaccatacttcagaaagtatgaa
tatccaaagaagaggccaccaagtttttatcaagtaactaatcattcgaaagagagacct
gatgtgtgggttgatagccctgagaaatcaattattctgtctattaccagtgatatccga
actatagaatctgaggtatttgctgcaccttacagcctgagatttcctaggattgacagg
gtgagatatgacaaagcttggaacgaatgccttgatgttcaatcatttatagaactagtg
cattctagcaatggtaccacacagagggatacagaatatggcagcaaacaggacagtaaa
ccaaaaagaatgaaatcctccactaggggagacaagaaaaacatgtccattgttccttct
catttaattcaaactgatatttccagcattaaggggggcaccttaatattttcaaatatg
atgttctactttgctaatgtgccttcatcgcattctcttgagtccttgcacaaaataatt
gctgagaatgggggaactttttcaatgaatttgaacaactcagtcacacattgtgttgcc
gcagacagcaagggctttaaatttgaagcagcaaagcgtcatggtgatatcattcattat
tcttgggtactagactgttatgaacaaaaaaagcttgtctgcttacagcctaagtacttc
cttttcctatctgaactgacaaagaagaagttccgagaagaaattgatgagttctcagac
tctttctacttggacctagatcttggagacatcaagcagctcctaagcaatattagtaag
tctgaagatgtcagcactgtcgatcattacaggaaaaaatactgtccgaaggataagtgg
tctttcttttgtggatgttcaatttatttccacactgcaataccttcattgaaaggagat
tggcattatatattacaacttgctttgaggagattcaagcttgaagttctcatgggtggt
ggaaaagttacctctaatcttacttctgcaacccatttagtggcctttcttgtgccagga
tgtctgactgactttgaacaaatactgagtagtttcacttcagtagaaaggaaaattctc
cgaagcaagaggttgtatatagttaattcccagtggttggaagattgttcagacagtagc
caaagattaccagaagactcttacagtttgaagccctggggaatagaagagacaactgct
gaagattgtgaacaggacttggcgttagaggctcatcagtgtggagataacacacaagac
caaaatacatctttctctgacaagggaaatcggcaaagaagtgaacaagttgcatgcgaa
gacagtatggccttcttatccggagagaagggtatcaaaaggaaaagaggaagacctgtg
ggcattggtataaaaaatgtaaaaccaataggcaaaaaaactcgaaaagcacgaccacaa
aatgtgaaaaagcctactaaaatatgtgaatatgaatcatcggatgaaagtgattttcgt
gacaagcaggagattgacaccagagcaggaagtcttaacttttataagaaacattcagaa
cccaaggagaatgaggaacaagaaaatgtccaagtttctaggacagtggaaagttctgaa
caaaataaggtagataacaagctggaggacttgaaggacaatgatcatgaaagaatgttg
attcctgaaatagaaatgactgataggtacaatgaccaaaacaatgaggtgaaagagaaa
ttagacttttctgctgacccccttcaggcgatgttatttgacatgattcctagtcttggc
acccaaaaagttgagcaacctatgaatcttagtgttagagaagagaaactagcaaaaacc
tccaatgcagaaacctccaatgcagaaacagagcctataactacaaagaaaaataaggtt
agcttcatggatgctgccaacgagctgctgaaggactggtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (6)   
   RefSeq(nuc) (4)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (8)   
All databases (35)   

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