KEGG   Vigna radiata (mung bean): 106772476
Entry
106772476         CDS       T04126                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
  KO
K12820  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
Organism
vra  Vigna radiata (mung bean)
Pathway
vra03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106772476
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vra03041]
    106772476
   03009 Ribosome biogenesis [BR:vra03009]
    106772476
Enzymes [BR:vra01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     106772476
Spliceosome [BR:vra03041]
 Complex A
  U2 snRNP components
   U2 related factors
    106772476
 Complex B
    106772476
 Complex C
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-SnRNP related factors
    106772476
Ribosome biogenesis [BR:vra03009]
 Eukaryotic type
  90S particles
   Helicases
    106772476
SSDB
Motif
Pfam: OB_NTP_bind HA2_C HA2_N DEAD Helicase_C AAA_22 AAA_19 nSTAND3 ResIII SRP54 ABC_tran T2SSE AAA_7 AAA_30 FtsK_SpoIIIE Flavi_DEAD AAA_33 TsaE PhoH AAA_29
Other DBs
NCBI-GeneID: 106772476
NCBI-ProteinID: XP_014514382
UniProt: A0A1S3V856
Position
8:29182660..29186387
AA seq 720 aa
MGTERKRKVSLFDVVDDTVGKMAKSNGFVGNNLINRWNGKPYSQRYHDILEKRKTLPVWH
QKEEFLQVLKDNQTLILVGETGSGKTTQIPQFVLEAVDIETPDKRRKMMIACTQPRRVAA
MSVSRRVAEEMDVNIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVII
LDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQGYFNGAPLMKVPGRLHP
VEIFYTQEPERDYLEAAIRTVVQIHKDEPPGDILVFLTGEEEIEDACRKISKEISNLGDQ
VGPVKAVPLYSTLPPAMQQKIFEPAPPPLKEGGQPGRKIVISTNIAETSLTIDGIVYVID
PGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLQPQT
YPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTKL
GEIMSEFPLDPQMSKMLVVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAADEAKARFG
HIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKAADNVRQQLVRIMARFNLKLCST
DFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNE
YVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPQCEAKRVLERLYKKREKEKDEARSRK
NT seq 2163 nt   +upstreamnt  +downstreamnt
atgggtacagagaggaagaggaaggtaagcttgttcgacgtggtggacgatactgtcggt
aagatggccaaatcaaacggattcgtcggtaacaacctcatcaaccgatggaacgggaag
ccttattcgcagaggtatcacgatattttggagaagaggaagaccctcccggtctggcac
cagaaggaggagttcttgcaggttttgaaggataaccagactctcattctcgttggtgaa
actggtagtggaaaaaccactcagattcctcagtttgtgttggaagctgtggatatagaa
acccctgataaacgtaggaagatgatgattgcgtgcactcagcctcggagagtggctgcg
atgtctgtttccaggcgtgtggctgaggagatggacgtgaatattggagaagaggttggt
tacagcatcagatttgaggattgcagtagcgccagaacagttttgaagtatctcacagat
ggtatgcttttgagagaagcaatgacggatccacttttggaacgatacaaagtaattatt
cttgatgaggcacatgagaggactttggctaccgatgtgctgtttggtcttcttaaggaa
gtgcttagaaatagacctgacttgaagttggttgttatgagtgcaactcttgaagctgaa
aagttccagggatactttaatggggctcctcttatgaaggttcctggaagactacatccg
gtggaaatcttctatactcaggagccagagagggattacttggaggctgctattaggact
gtggtgcagatacacaaagatgaacctcctggagatatacttgtttttctcactggagag
gaagagattgaggatgcatgccgcaaaatttcgaaagaaatatcaaatttgggagaccag
gtgggtcctgtgaaagcagttcccctgtattctacccttcctcctgctatgcaacaaaag
atttttgagccagctccacctccactaaaggagggagggcaacctgggaggaagattgta
atatcaacaaatatagcagaaacttcgttgacaattgatggtatagtctatgttattgac
cctggatttgctaagcagaaggtttataaccctcgagtccgtgttgagtctttgttggta
tctccaatatcaaaggctagtgctcatcagagatctgggcgagctggaagaactcagcca
gggaaatgttttagactttatactgaaagaagtttcaataatgatcttcagccacagacc
taccctgaaatcttgagatctaatctagccaacactgttcttaccttaaagaaacttggt
atagacgatttagtgcattttgatttcatggaccctcctgccccagagaccttaatgcgt
gcactggaagtgttgaattacttgggtgctctggacgatgatggcaacttaaccaagctg
ggtgagattatgagtgaatttccactggatcctcagatgtcgaagatgctcgttgttagt
cctgaattcaactgttcaaatgagattctttctgtttctgccatgctatcagtacccaat
tgctttgtccggcctagggaggcacagaaagctgcggatgaagcaaaagctaggtttgga
cacattgatggagatcacctcacgctcttgaatgtataccatgcgtacaagcaaaataat
gaggacccttcttggtgctacgataacttcgtcaatcacagggcgttgaaagcagccgat
aatgttagacaacaactagtgcgaatcatggctcggtttaacctgaagttatgcagtact
gattttaatagccgtgactactatgtaaacataagaaaggcaatgctagcgggatatttc
atgcaggtggctcatctggagcggacaggacattacctgacggtgaaagacaaccaggtg
gtgcacttgcatccatcaaattgcctggaccacaagccggagtgggtaatttataatgaa
tatgttcttaccagtcggaattttattcgaactgtcacagatatacgtggagaatggttg
gtggatatagccccacattactatgatctatcgaattttccacaatgtgaagcgaagcgt
gttcttgaaaggctctacaagaagcgagagaaggaaaaagacgaagccagaagtcgtaag
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (6)   
   RefSeq(nuc) (4)   
   GenBank (1)   
   EMBL (1)   
Protein domain (20)   
   Pfam (20)   
All databases (40)   

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