KEGG   Vibrio scophthalmi: VSVS12_01600
Entry
VSVS12_01600      CDS       T04650                                 
Symbol
sbcB
Name
(GenBank) Exodeoxyribonuclease I
  KO
K01141  exodeoxyribonuclease I [EC:3.1.11.1]
Organism
vsc  Vibrio scophthalmi
Pathway
vsc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vsc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    VSVS12_01600 (sbcB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vsc03400]
    VSVS12_01600 (sbcB)
Enzymes [BR:vsc01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     VSVS12_01600 (sbcB)
DNA repair and recombination proteins [BR:vsc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     VSVS12_01600 (sbcB)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     VSVS12_01600 (sbcB)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      VSVS12_01600 (sbcB)
SSDB
Motif
Pfam: Exonuc_X-T_C RNase_T
Other DBs
NCBI-ProteinID: ANS85367
UniProt: A0A1B1NNP0
Position
1:complement(1746823..1748259)
AA seq 478 aa
MVDSMQQEHQPTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYL
PGVEAALITGISPQLAASKGLIEPEFIRQIHEQLATPNTISLGYNSIRFDDEVTRYTCYR
NFFDPYAWSWQNGNSRWDLLDVMRACHALRPEGIEWPENDEGYISFKLEHLSVANGIEHA
NAHDAMADVIATIELAKKIKAAQPKLFDYFLTMRHKRKLNELVDIVNMTPLMHVSGMLGR
ECNYTSWIVPVAWHPTNKNAVIVVDLAKDPQVLFDLDENALKERLYTKHSDLAPDELPVP
VKLVHLNKCPILAPAKTLTAENADKIGIDREQCLQNLQVLRQHPEIREKLIGLFAVEREY
EKSADVDTQLYDGFFSPADRAAMDIVRQTEPEHLAALDITFSDARIEPLLFRYRARNFPW
TLTEQEQLRWNSHCQDYFQSRMDEYMLNFENLVHEHESDTKKITLLKSVYQYVEKLVS
NT seq 1437 nt   +upstreamnt  +downstreamnt
atggtagatagcatgcaacaagagcaccaaccgacgtttttcttcttcgattatgaaacg
tggggaaccagcccagccaaagatcgcccaagccaatttgcgggagtacgcacggacatg
gactttaatattattggcgagcctcttgtcatctattgccaaccaccctcagactatttg
ccaggagtggaagcggcactgattaccggcatttctccccaactggctgcaagtaaaggc
ctgatcgagcctgaatttatccgccaaattcatgaacaattggcaacgccaaacacgatt
agccttggttacaatagtattcgttttgatgacgaagtaacgcgctatacttgttaccgc
aatttctttgacccttatgcgtggagttggcaaaacggtaactcacgttgggacttactc
gatgtgatgcgtgcttgccatgctttacgccctgaaggtattgaatggccagaaaacgac
gaaggctatattagcttcaaacttgagcacctttctgtggcaaacggcattgaacacgcc
aatgcgcacgatgcgatggctgatgttatcgccacaatcgaactggcaaaaaaaatcaaa
gccgcacaaccaaaactgtttgattacttccttaccatgcgtcataagcgcaagctcaac
gaattggtcgatatcgtcaatatgaccccgctgatgcatgtctcgggaatgcttggccgt
gaatgcaactataccagctggattgtgcctgtcgcttggcacccaaccaataaaaatgca
gttattgtggttgatctcgccaaagatccgcaagtattgttcgatctggatgagaatgcg
ttgaaagagcgcctatataccaaacacagtgatttggctcctgatgagttgcccgttcct
gtgaagctggtgcatttgaacaaatgtccgattcttgcccctgcgaaaacactgacggca
gaaaatgccgacaagattggtatcgatcgtgaacagtgcttacaaaacttacaagtgctc
cgtcaacacccagagatccgagaaaaattgattggcttgttcgctgttgaacgtgaatat
gaaaagagcgctgacgttgatactcaactttatgatggattcttttcacccgcggatcgc
gctgcgatggacattgttcgtcaaaccgaacctgagcacttagcggcgcttgatatcacc
ttcagcgatgcgcgtatcgaaccgctattgttccgttatcgtgcgcgtaacttcccatgg
acactcaccgagcaagaacaacttcgttggaatagccactgccaggactacttccaaagt
cgcatggacgagtacatgctaaattttgaaaacttagttcacgaacatgaaagtgataca
aagaaaatcactctattaaaatctgtgtatcaatacgtagagaagcttgtttcgtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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