KEGG   Vibrio mediterranei: BSZ05_09340
Entry
BSZ05_09340       CDS       T04936                                 
Name
(GenBank) ATP-dependent RNA helicase SrmB
  KO
K05590  ATP-dependent RNA helicase SrmB [EC:3.6.4.13]
Organism
vsh  Vibrio mediterranei
Brite
KEGG Orthology (KO) [BR:vsh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:vsh03009]
    BSZ05_09340
Ribosome biogenesis [BR:vsh03009]
 Prokaryotic type
  rRNA helicases
   BSZ05_09340
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 Helicase_C_2 UTP25 UvrD-helicase AAA_30 AAA_11
Other DBs
NCBI-ProteinID: ASI89967
Position
1:complement(1978834..1980057)
AA seq 407 aa
MIRTFAELDLDPVLLEAIEEMGYSRPTEIQAQAIPQALDAKDILASAPTGTGKTASFAIP
AIQYLLDFPRKKAGPARILVLTPTRELAMQVAEHTKALAKHTRLKVATITGGVTYDTHAD
TLAQTQDIVVATPGRLMEYIESERFDCRAIEWLVLDEADRMLDLGFGPTVDRLSAECRWR
KQTLLFSATLEGRGVEGFTADLLKAPAEISAEPSTRERKKITQWYHRADNAEHKLALLKH
ILTEQAQRTIVFLKTRERLGELRQQLDSAQIPCSWIQGEMPQDRRNNAISRFRDGSVNIL
LATDVAARGIDLPDVSHVINYDLPRSADVYLHRIGRTARAGKKGTAISIVEAHDQPMMDR
VGRYTKELIKERFIDGLRPTHKKPVFKKKKKKEDKKKAVKKKNGKKK
NT seq 1224 nt   +upstreamnt  +downstreamnt
gtgatcagaaccttcgctgaattagatttagatcctgtccttttagaagcgatagaggaa
atgggctatagccgccctacagagatccaagcacaggctatcccacaagcacttgatgcc
aaagacatcttagcctcagcgccaacagggactggtaaaacagcttcctttgccattcca
gcgattcaatatctgctggattttccacgcaaaaaagctggcccagcacgtattctagtt
ttaacgccaacacgtgagctagcgatgcaagtggctgagcacaccaaagctctggcaaaa
cacacccgtctgaaagttgctaccattactggtggcgtgacttacgacactcacgctgac
acgcttgctcaaacccaagatatcgtagtagccacaccaggacgtctgatggaatacatc
gaatcagagcgttttgattgccgcgcgattgaatggttggtattggacgaagcagatcgc
atgctcgatcttggttttggaccaaccgtagaccgcttgtctgcagaatgccgatggcgc
aagcaaacgttactgttctctgccacattggaaggtcgtggtgtagaaggctttactgcc
gatctactgaaagctcctgctgagatttctgcagagccatcaacgcgtgaacgcaaaaaa
atcactcagtggtatcaccgtgccgacaatgctgagcacaaactggcattgctcaagcac
atactcactgaacaagctcagcgcactatcgtatttttaaagacccgtgaacgcttaggt
gaacttcgtcagcaactagacagtgcacaaatcccatgttcatggattcaaggtgaaatg
cctcaagatcgccgtaacaatgctatcagccgtttccgtgacggtagcgtgaatatccta
ctggcaactgatgttgctgctcgtggtattgaccttcccgacgtttcacacgtgatcaac
tacgacttaccacgcagtgctgatgtttatctgcaccgtattggccgtactgcacgtgct
ggtaaaaaaggtacagcaatctctattgtggaagctcacgaccagccaatgatggatcgt
gtaggtcgttacactaaagagctgatcaaagagcgctttattgatggcttacgtcctaca
cacaaaaagcctgtgtttaagaaaaagaagaagaaagaagacaagaagaaagccgtgaaa
aagaaaaatggcaagaagaagtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (16)   

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