KEGG   Vitis vinifera (wine grape): 100248358
Entry
100248358         CDS       T01084                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03020  RNA polymerase
vvi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100248358
  09124 Replication and repair
   03420 Nucleotide excision repair
    100248358
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vvi03021]
    100248358
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100248358
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100248358
Transcription machinery [BR:vvi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     100248358
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100248358
DNA repair and recombination proteins [BR:vvi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      100248358
SSDB
Motif
Pfam: S1 SHS2_Rpb7-N Vg_Tdu
Other DBs
NCBI-GeneID: 100248358
NCBI-ProteinID: XP_002282298
UniProt: A5C1N5 A0A438F9R0
Position
6:complement(join(6375592..6375654,6376379..6376447,6376535..6376600,6377304..6377354,6377501..6377666,6377854..6377969))
AA seq 176 aa
MFFHIVLERNMQLHPRHFGRHLRDNLVAKLVKDVEGTCSGRHGFVVAITGIENVGKGLIR
DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPVTS
NT seq 531 nt   +upstreamnt  +downstreamnt
atgttcttccacatagttttggaacgaaacatgcagcttcaccctcggcattttggccgc
cacctacgtgacaatcttgttgccaagcttgtgaaagatgttgagggaacttgcagtggt
cgacatggatttgtggtggcaataacaggtattgagaatgttggaaaagggttaattcga
gatggaacagggtttgtgacttttccagtgaagtaccagtgtgttgtgttccgaccattt
aaaggagagatcttagaagctgttgttaccatggttaacaagatgggattttttgctgaa
gctgggcctgttcaaatttttgtttcaaatcatttgataccggatgatatggagttccaa
tctggagatatgccaaattatacgacgtcagatggttcggttaagatccagaaggacagt
gaagtgcggttaaagataattggaactcgagtagatgctacagaaattttctgcattggt
actataaaagatgatttcttgggtgtcatcaacgatcctgtaacgtcttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (11)   
   RefSeq(nuc) (1)   
   GenBank (5)   
   EMBL (5)   
Protein domain (3)   
   Pfam (3)   
All databases (33)   

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