KEGG   Vitis vinifera (wine grape): 100249755
Entry
100249755         CDS       T01084                                 
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1 isoform X2
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03022  Basal transcription factors
vvi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    100249755
  09124 Replication and repair
   03420 Nucleotide excision repair
    100249755
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vvi03021]
    100249755
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100249755
Transcription machinery [BR:vvi03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     100249755
DNA repair and recombination proteins [BR:vvi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     100249755
SSDB
Motif
Pfam: BSD PH_TFIIH SHOCT
Other DBs
NCBI-GeneID: 100249755
NCBI-ProteinID: XP_002276057
UniProt: D7UAQ6
Position
19:complement(join(9751065..9751151,9751597..9751665,9752290..9752337,9753013..9753090,9753328..9753441,9753549..9753740,9753805..9753932,9754037..9754093,9754336..9754459,9755582..9755647,9756051..9756206,9756383..9756439,9756943..9756987,9757257..9757352,9757562..9757637,9758539..9758665,9760164..9760227,9760449..9760516,9760818..9760896,9761197..9761274))
AA seq 602 aa
MSGEVLKRARYKTSVKDSGVAGVLKMTEDKFVFMPNDPTSSARFDVEFRFIKGHKFSKGG
SNKPALLNLTQDSEKGGGYIFEFENYPDREVCREFVGRALAKFSEASKAGSEQSAVKLFD
EQLSTIEMERRIKLLREDSELQKLHKQFVLSGVLTEAEFWATRKKLLDGNTSRTSKQRVG
FKSAMISDLKPLTDGRTNRVTFNLTPEIIHQIFAEKPAVHQAFLNFVPNKMTEKDFWNKY
CRAEYLHCTRNTVAAAAEAAEDEELAVFLKHDDILANEARRKIRRVDPTLDMEADQGDDY
MHLPDHGIFRDGSKEIIDPQYEQYRRTLSQDLNRHAAVVLEGRPIDVELEDTRTVAEALA
KSKRVEAANEKSDGSVTRERLERISRMTEIEDLQAPRDLPFAALCIKDPRDYFDSQQANA
LKTLGDTLAGSKQIKCSLSTQEAYGSLRGFISEIKSVGLSDPIVKPDIALKVLNGLTQNI
SSTKFHLGKNPQESVLDRLPIITKEELLHHWTSIQELLRHFWSSYPITTTYLYTKASRLK
DAMSQIYPKLQEIKESVQSDFRHQVSLLVQPMLQALDAAFAHYDADQQKRSARSGERPNG
FV
NT seq 1809 nt   +upstreamnt  +downstreamnt
atgtctggcgaggtcctgaagcgtgctaggtacaagacgtcagtcaaggactctggagtt
gcgggtgttctgaaaatgactgaggacaaatttgtattcatgcctaatgaccccacatca
tctgcaaggttcgatgttgagtttcggttcattaaaggtcacaaatttagcaagggggga
tcaaataaacctgcattgcttaatctcacacaagattccgaaaagggtggaggttacatt
tttgagtttgaaaactatccagaccgtgaagtttgccgagaatttgtgggcagagccctt
gcaaaattcagtgaggcttcaaaagctggttctgaacaatctgcggttaaactttttgat
gagcaacttagtaccatagaaatggagcgccggataaagctactgcgagaggatagtgag
ttgcagaaacttcataagcaatttgtactcagtggtgtcttgacagaagctgaattttgg
gcaactaggaagaaattgctggatgggaatactagtagaacttcaaaacaacgtgtggga
ttcaaaagtgccatgatatcggatcttaaaccattgactgatggtcggacaaacagagtt
acatttaacttgacaccagaaataattcatcagatttttgctgagaaaccagctgttcat
caggcatttttgaattttgttcccaataagatgacagaaaaggacttctggaacaaatat
tgtagagccgaataccttcattgtacgagaaacacagttgctgctgcagcagaggctgct
gaagatgaggaacttgctgttttcttgaagcatgatgatatattggccaatgaagctcgg
cggaagatcagacgggttgatccaactttggacatggaggctgaccagggggatgattat
atgcatcttccggatcatggtatctttcgtgatggtagcaaggaaattattgacccacaa
tatgagcaatatagaaggactctttcacaagaccttaatcggcatgctgcagttgttctt
gaaggaagacctatagatgtggagttggaagacacaagaactgtagcagaggctcttgcc
aagtcgaaacgggttgaggcagctaatgaaaaatctgatgggagtgtaacccgggaaaga
ttagaaaggatttctcggatgactgagattgaggatcttcaggcacctcgtgaccttcca
tttgcagcactttgcattaaggatcctcgtgactattttgattcccaacaagcgaatgca
ttaaaaactttgggagacaccctagccggatcaaagcaaataaaatgcagcctgagcacc
caggaagcatatggttctttgagaggatttatttctgagatcaaatctgtaggattaagt
gatcccatagttaaacctgatattgctcttaaggttcttaatgggttgacccagaatatc
tcaagtaccaagttccatcttgggaagaatcctcaagaaagcgttctggatagattgcca
atcattactaaagaggaattgctacatcattggacctcaattcaagaattactgagacat
ttctggtcgtcatatccaattacaactacatatctttatactaaggcaagcaggctaaaa
gatgccatgtctcaaatttatccaaagctacaggagataaaggaatctgtgcagtctgat
tttaggcatcaagtttccctccttgttcaaccaatgcttcaggctctagatgctgctttt
gcacattatgatgcagaccaacagaagagatcagcgcgaagtggagaaagacccaatgga
tttgtctag

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