Entry |
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Name |
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic isoform X2
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KO |
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Organism |
vvi Vitis vinifera (wine grape)
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:vvi00001]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
100257338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:vvi03400]
100257338
Enzymes [BR:vvi01000]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
100257338
DNA repair and recombination proteins [BR:vvi03400]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
100257338
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SSDB |
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Motif |
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Other DBs |
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Position |
8:join(21013126..21013163,21013582..21013771,21013849..21013949,21014586..21014665,21014843..21015076,21015272..21015597,21016560..21016670,21018524..21018661,21018800..21018847,21019155..21019235,21019485..21019644,21020217..21020338)
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AA seq |
542 aa
MILGFQSFINLTHFAVTPLSLRARTLVYLKARTTGSQRLVCYSSEIESSSTLTSKKVKKE
SSSMSSRPNTKKGVIEENASRTQSIEIQSIRDDPAKVKAMTVQELTTTLRSVGVPAKGCK
RDLVLALKSFLDNKASDESSQAEEQLELNILSKRKAKNLSVEDHEQNVNIVSDASGLKQS
KRRAKQSPVEAKIEVNTEIINEKEKPSIKNKEASGNKLYQGERKASSRSSIKQIAVTERI
DISMNEPEPWTVLTHKKPQEGWIPYNPRTMRPPPLTGDAKFVKLMSWNVNGLRGLLKSKG
FSALKLAQREDFDVLSLQETKLQEKDVEAIKQSVIEGYENSFWTCSVSKLGYSGTAIISR
IKPLSVRYGLGISDHDSEGRLLTAEFESFYLLSGYVPNSGDGLKRLSYRVTQWDSALGSY
MKELEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTDEERQSLEKNFLSKGFVDSFRK
QHPGVVGYTYWGYRNGCRKSNKGWRLDYFLVSESIADKVHDSYILPDIGGSDHCPIGLVL
KL |
NT seq |
1629 nt +upstreamnt +downstreamnt
atgattttaggctttcagagcttcattaatcttacacattttgcagtaactcctctgagt
ttgagagccagaacgttggtttatctgaaagctagaacaacagggtctcaaagactcgtt
tgctactcatcggagatcgaatcgtcatcaactcttactagcaagaaagttaagaaagag
agtagttccatgagtagtaggccaaataccaaaaagggtgttatcgaggaaaatgcatcc
agaacccaatcgattgaaattcagagcatcagggatgatccggctaaagtcaaggcaatg
acggtccaagaactgacaacaacattaaggagtgttggagtccctgccaaaggctgtaaa
cgagatctcgtgttggcattgaaatcgttcctggacaataaagcctctgatgaaagttct
caggcagaagaacagctggaattaaatattttgtccaagaggaaggccaagaatttatct
gttgaagaccatgagcaaaatgtcaacattgtttcagatgcttctgggcttaaacagagt
aagagaagggcaaaacagtctcctgttgaggctaaaattgaggtcaatactgaaatcatc
aatgaaaaagagaagccatcaatcaaaaataaggaggcttcaggcaacaagctctatcag
ggggagagaaaagcatcctcaagaagtagtatcaaacagattgcagttactgaaagaatt
gatatatctatgaacgaacctgaaccatggactgttcttacccacaagaagcctcaagag
ggctggattccatataaccccaggaccatgaggcctcctcctcttacaggggatgccaag
tttgtaaaactaatgtcttggaatgttaatgggttaagaggcttgctgaaatcgaagggc
ttctctgcactgaaactggcacaaagagaagattttgatgttttgtctctgcaagagacc
aaactgcaggagaaggatgtggaagcaatcaaacagagtgtcatagagggctatgagaat
agtttttggacatgtagtgtttccaaacttggatattctggtactgcaattatttcacgg
ataaagccactttcagtcagatatggtctaggcatatcagatcatgatagtgaaggacgg
ctcctgacagcagagtttgaatctttttatttgttaagtggatatgttcctaattctgga
gatggtttgaaaagactgtcatatagggttacacaatgggattcagctcttggaagttat
atgaaagagctcgaaaagtcaaaacctgtcattttgactggtgatctaaactgtgctcat
caagagatagacattcatgatcctgctggaaatagaagaagtgctgggtttactgacgaa
gaaagacaatcgttggagaagaatttcttatcaaagggttttgtggatagctttagaaaa
caacaccctggtgttgttggctatacttactggggttataggaatggctgccgcaaatct
aataaagggtggcggctggactacttccttgtctcagaatccatagctgacaaggttcat
gactcatacatcctccctgacattggtggaagtgatcattgtccaattggcctcgttctc
aagctctag |