KEGG   Vitis vinifera (wine grape): 100268052
Entry
100268052         CDS       T01084                                 
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein MSH2
  KO
K08735  DNA mismatch repair protein MSH2
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    100268052 (MSH2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100268052 (MSH2)
DNA repair and recombination proteins [BR:vvi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     100268052 (MSH2)
SSDB
Motif
Pfam: MutS_V MutS_III MutS_IV MutS_I MutS_II
Other DBs
NCBI-GeneID: 100268052
NCBI-ProteinID: XP_010663545
UniProt: D7SIV1
Position
17:complement(join(4717248..4717457,4718987..4719139,4721430..4721632,4722479..4722605,4726088..4726198,4726508..4726579,4726673..4726762,4726875..4726985,4727061..4727615,4728342..4729415,4741198..4741230,4741507..4741556,4741718..4741766))
AA seq 945 aa
MDQDSQDHSKLPELKLDAKQAQGFLSFFKTLPRDPRAVRFFDRRDYYTAHGENATFIAKT
YYHTTTALRQLGSGSDGISSVSVSKNMFETIARNLLLERTDHTLELYEGSGSNWRLVKSG
TPGNLGSFEDVLFANNEMQDSPVIVALFPNFRENGCTVGLGFVDLTRRVLGLAEFLDDSQ
FTNVESALVALGCRECLLPSESAKSSETRTLHDALSRCGVMLTERKRTEFKARDLVQDLG
RLVKGSIEPVRDLVSGFELAPGALGLLLSYAELLADESNYGNFTIQRYNLDSYMRLDSAA
VRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDVNEINCRQDLVQAF
VEDTALRQDLRQHLKRISDIERLLRTLEKRRASLQHVVKLYQSSIRLPYIKSALGQYDGQ
FSSLIKEKYLDPLESWTDDDHLNRFIGLVEAAVDLNELENGEYMISSGYDAKLASLKNDQ
ETLELQIHNLHKQTAIDLDLPMDKSLKLEKGTQFGHVFRITKKEEPKIRKKLTAKFIVLE
TRKDGVKFTNTKLKKLGDQYQKILDEYKDCQRELVVRVVQTAATFSEVFENLARLLSELD
VLLSFADLATSSPTAYTRPEISPSHMGDIILEGSRHPCVEAQDWVNFIPNDCKLVREKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKANISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATH
FHELTALAHENTDHQPPEKQIVGVANYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIHVA
EFANFPESVVTLAREKAAELEDFSPTEIVSNDASDKGLKVGSKRKRESSPDDISRGAARA
HQFLKEFSDLPLEKMDLKEALQQVSKLKNDLEKDAVNCHWLQQFF
NT seq 2838 nt   +upstreamnt  +downstreamnt
atggatcaagattctcaagatcacagcaagctccctgagctcaaactagatgctaagcaa
gctcaggggtttctctccttctttaaaaccctaccccgggaccctcgagctgttcggttc
tttgatcgccgggactactatactgctcatggtgagaatgcgactttcattgcaaagaca
tattaccacactaccaccgctttgcgacaactgggtagtggatctgatggcatttctagt
gtgagtgtgagcaaaaacatgtttgaaacgattgctcgtaatcttttattggagagaaca
gatcacactcttgaactctatgagggtagtggctcaaactggagactggtgaaaagcggg
acccctggaaatcttggaagttttgaagatgttttgtttgccaataatgagatgcaggat
tctcctgtgattgttgcactttttccaaacttccgtgaaaatggatgcactgttgggttg
ggctttgttgacttaactaggagagtcctcggattggctgaatttcttgacgatagtcaa
tttacaaatgtggagtcagctttggttgcccttggttgcagggagtgccttctgccttca
gagagtgccaaatccagtgaaactagaacattgcatgatgcattgtcaagatgtggtgtg
atgttaactgaaagaaagagaactgagttcaaggcaagggatttggtgcaggatcttggt
aggcttgtcaagggttcgattgaaccagttcgtgatttagtttcgggttttgaacttgca
cctggagctttggggttattactgtcttatgcagaattacttgcagatgagagcaattat
ggaaattttaccatccagagatacaatcttgacagctacatgagattggattctgctgct
gtaagggcattgaatgtcctggagagcaaaacggatgcaaacaaaaattttagtctattt
ggtctcatgaacagaacctgtactgctgggatgggaaagagattactgcacatgtggttg
aaacagcctttagtagatgtaaatgaaattaactgcaggcaggatttggtgcaagcattt
gtggaagatactgcactccgccaagatctgagacaacatttaaaaagaatatcagatatt
gagcgattgttgcggactctcgagaagaggagagctagtctgcagcatgttgtaaaactt
tatcagtcaagtattagacttccatacattaaaagtgccttgggacagtatgatggacaa
ttttcatcactaatcaaagagaagtatttggatccccttgagtcctggacagatgatgat
catttaaataggttcattggtcttgtggaagctgccgttgaccttaatgaactggagaat
ggggaatacatgatctcatctggttatgatgcaaaactagcttccctgaaaaatgatcaa
gagacactggagctccaaatacacaatctacataaacaaactgctattgatcttgatctg
cctatggataagtctttaaagttagagaagggcacgcaatttgggcatgtgtttagaatt
acaaagaaggaagagccaaaaattcggaaaaagctcactgccaaatttattgtccttgaa
acccggaaagatggggtaaaatttacaaacacaaagcttaaaaaattaggggatcaatac
caaaagatacttgacgagtataaggattgtcaaagagagctggttgtccgagtagttcag
actgcagcaactttctctgaggttttcgagaatttagctcgcttgctttctgaacttgat
gtcttacttagttttgccgatttggcaactagttctcctactgcctacacaagacctgaa
atctctccatcacacatgggagatatcatattagaaggaagtagacacccttgtgtggag
gctcaagactgggtgaattttataccaaatgattgtaagcttgtcagggaaaagagttgg
ttccaaatcatcacagggcctaacatgggtggaaaatctacattcattagacaggttggt
gtgaacatcttgatggcacaagttggctcatttgttccttgtgacaaagccaatatttct
gttcgagattgtatttttgctcgtgtgggtgctggagactgccaactacgtggcgtttct
acctttatgcaagaaatgcttgaaactgcatcaatattgaaaggtgctactgataagtca
ttgataatcattgatgaattgggccgtggaacatctacatatgatggatttggtttagct
tgggctatatgcgagcacattgttgaagtgattaaagcacctactttgtttgccactcac
tttcatgaactaactgcattagctcatgaaaatactgatcatcagcctcctgaaaagcaa
attgttggtgtggccaattaccatgttagtgcacacattgactcatcaagtcgcaagttg
actatgctttacaaggttgagccaggggcttgtgaccaaagttttggtatacatgttgca
gaatttgcaaactttcctgaaagtgttgtcactcttgcgagagaaaaggctgctgagttg
gaagatttctcacctactgaaatcgtttcaaatgatgctagtgacaagggcttaaaggtg
ggatccaaacgaaagagagagagtagtcctgatgacatttctagaggtgctgcccgggct
caccagttcttgaaagagttctctgatttgccattagagaaaatggacttgaaggaggct
ctgcaacaagtgagcaagttgaagaatgacttggagaaggatgcagtgaactgtcactgg
ctccagcaattcttctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (5)   
   Pfam (5)   
All databases (34)   

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