KEGG   Vibrio vulnificus CMCP6: VV1_1211
Entry
VV1_1211          CDS       T00108                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
vvu  Vibrio vulnificus CMCP6
Pathway
vvu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:vvu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    VV1_1211 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vvu03021]
    VV1_1211 (rpoB)
   03400 DNA repair and recombination proteins [BR:vvu03400]
    VV1_1211 (rpoB)
Enzymes [BR:vvu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     VV1_1211 (rpoB)
Transcription machinery [BR:vvu03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     VV1_1211 (rpoB)
DNA repair and recombination proteins [BR:vvu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      VV1_1211 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 Cas_Cas2CT1978 DUF6155
Other DBs
NCBI-ProteinID: AAO09671
UniProt: Q8DD20
Position
I:1187564..1191592
AA seq 1342 aa
MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQDPEGQYGLEAAFRSVFPIQ
SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLYVRIDRRRKLPSTIILRALGKSTEEILDTFFEKVNFEVKDQTLMME
LVPDRLRGETATFDIEANGTVYVEKGRRVTARHIRQLEKEGVDQIEVPVEYIVGKVSSKD
YINEATGEIIVAANQEISLEALAKLSQAGHKQLEVLFTNDLDHGPFMSETLRIDSSVDRI
SALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIGRDDAEEQGTL
DETDIIEVMKKLIAIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDAVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVVDGVVT
DEVDYLSAIEEGQFVIAQANAKLNEDGTFADELITARQKGESGLHPREHVDYMDVATNQV
VSIAASLIPFLEHDDANRALMGANMQRQAVPTLKAEKPLVGTGIERNVAVDSGVTSVAKR
GGIIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEPVLRG
DVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELTCVA
RDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDL
TEEFQILEGGLLNRVKAVLLSGGYSEAKLDTTDRKKWLELTLEDDALQTQLEQLAEQYDE
LKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMVKEQQELAK
FREFLQKVYDLGETRQKVDIASLSDEEVRTLIGNLRGGLPIATPVFDGASEASIKELLKL
GGLPESGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHAMEPGMPE
SFNVLLKEIRSLGINIELEDEQ
NT seq 4029 nt   +upstreamnt  +downstreamnt
atggtttactcttataccgagaaaaagcgcatccgtaaggactttggtactcgtccacaa
gttttggacattccatacctgctatcgatccagctcgattcgttcgataaatttatcgaa
caggatcctgaaggacagtacggtcttgaggctgctttccgttctgtattccctattcag
agctacaatggtaattctgagctgcaatacgttagctaccgtcttggtgagccagttttt
gatgttaaagaatgtcaaatccgtggtgtaacttattcaaaaccacttcgcgtaaagcta
cgcctagttatttttgataaagacgcgcctgcaggcactgtaaaagacattaaagaacaa
gaagtctacatgggtgaaattccactcatgacagacaatggtacctttgtgattaacggt
accgagagggttatcgtatctcagctacatcgaagcccaggtgtgttcttcgacagcgac
aaaggtaagactcactcttctggtaaagttctgtacaacgcgcgtatcattccttaccgt
ggttcatggcttgattttgagtttgatcctaaggacaacctgtacgtacgtatcgaccgt
cgtcgtaagctaccatcaaccatcattcttcgtgcactaggtaagagcactgaagagatc
ttggatactttcttcgaaaaagtgaatttcgaagtgaaagaccagacgctaatgatggag
ttggtaccagatcgcctacgtggtgaaacggcaacgtttgatatcgaagcaaacggcact
gtctatgtagagaaaggtcgtcgtgttacggcacgccacatccgtcaacttgaaaaagaa
ggcgttgatcagatcgaagtaccggttgagtacatcgtaggcaaagtgtcgtcaaaagat
tacatcaatgaagcgactggcgagatcatcgttgcagcgaaccaggaaatcagccttgaa
gcattggctaagctatctcaagctggccacaagcagctagaagtcctgtttacaaacgat
ctagaccatggtccattcatgtcagaaacactacgcatcgacagctctgttgatcgtatt
tctgcactggtagaaatctaccgcatgatgcgccctggtgagccaccaacgaaagaagct
gctgaagctctattcgaaagcttgttcttctctgaagagcgttatgacctatcgactgtt
ggtcgtatgaagttcaacagctccattggccgtgatgatgcagaagagcaaggcacactt
gatgaaactgacatcatcgaagtgatgaagaagctgatcgctatccgtaacggtaaaggc
gaagtggacgatatcgaccacctaggtaaccgccgtatccgttctgttggtgaaatggct
gaaaaccaattccgtgttggtctagtacgtgttgaacgtgcagtgaaagaacgtctgagc
ctaggcgatcttgacgcagtgatgccacaagacttgatcaatgcgaagccaatttctgcg
gcagtaaaagagttctttggctcttctcagctgtctcagtttatggaccaaaacaacccg
ctatcagaagtcacgcacaagcgtcgtatttctgcattgggtcctggtggtcttactcgt
gagcgtgctggtttcgaagttcgagacgtacacgtaactcactacggccgcctatgtccg
atcgaaacgcctgaaggtccaaacatcggtctgatcaactctctatcagcatttgcacgt
tgtaacgagtacggcttcctagagacgccataccgtcgtgttgttgatggtgttgtgaca
gacgaagtggattacctatcagcgatcgaagaaggtcaatttgttatcgctcaggcgaac
gcgaagctgaacgaagatggtactttcgctgatgagcttatcactgctcgtcaaaaaggc
gaatctggtctgcacccacgtgaacatgttgattacatggacgttgcaaccaaccaggtc
gtatctatcgcagcatcgctaatcccgttcctagaacacgacgatgctaaccgcgctcta
atgggtgcgaacatgcaacgtcaggcggttcctactctgaaagcagagaaaccacttgta
ggtacaggtattgagcgtaacgtagcggttgactctggtgtaacgtcggttgctaaacgc
ggcggtattatccagtcagttgacgcatctcgtatcgtggtgaaggttaatgaagaagag
ttgattcctggcgaagctggtatcgatatctacaacctaaccaaatacactcgttctaac
caaaacacttgtatcaaccaacgtccatgtgtgatgccgggtgaaccagtgctacgtggt
gatgtgcttgctgatggtccttcaacagacctaggtgaacttgcacttggtcagaacatg
cgtatcgcgttcatgccttggaacggttacaacttcgaagactcgatcttagtatctgag
cgcgtagttcaagaagaccgcttcacgactatccacattcaagaactgacttgtgtggcg
cgtgataccaagctgggttcggaagaaatcacagcggatattccaaacgtaggtgaatct
gctctgtctaaattagacgagtcaggtattgtttacatcggtgctgaagtgaagggtggc
gacatcctagttggtaaagtaacgccaaaaggtgaaactcagctaacgcctgaagagaag
ctactacgtgcaatctttggtgaaaaagcatctgacgttaaagatacgtcactacgtgta
ccaaactctgtttcaggtaccatcatcgacgttcaagttttcactcgcgatggcgtagag
aaagacaagcgtgcgcttgaaattgaacagatgcagctgaaagaagcgaagaaagacctt
actgaagaattccagattctggaaggcggtcttctaaaccgtgttaaagcggttcttcta
tcaggtggttactctgaagcgaagctagatacaactgatcgtaagaagtggctagaactg
actcttgaagacgacgcactgcaaactcagcttgagcaacttgcagagcagtacgacgag
ctaaaagcagacttcgataagaagtttgaaaccaagcgtcgtaagatcactcaaggtgat
gacctagcgcctggcgtactgaagatcgttaaagtttacctagcggtgaaacgtcgtatc
cagcctggtgataagatggcgggtcgtcacggtaacaagggtgtaatctctaagatcaac
cctgttgaagacatgccatacgatgagaaaggtcagcctgtagacatcgtacttaaccca
ttgggtgtaccttcgcgtatgaacatcggtcagatcctagaagtacacttgggtctagca
gcgaaaggtattggtgacaagatcaaccagatggtgaaagagcagcaagaactcgcgaaa
ttccgtgaattcctgcaaaaagtttatgatctaggcgaaactcgccagaaagtagacatt
gcttctctgtctgatgaagaagttcgtactctgattggcaacctacgtggtggcttaccg
attgcgactccagtatttgacggtgcgtctgaagcatcaatcaaagagctactgaaactt
ggcggtctgccagagtccggtcagctaactctgtttgatggtcgcacaggtgatgcgttt
gagcgtcctgtaaccgtaggttacatgtacatgctgaaactgaaccaccttgtagatgac
aagatgcacgcacgttctactggctcgtacagtctggtaactcagcaaccactaggtggt
aaagctcagttcggtggtcagcgtttcggtgagatggaagtatgggcactagaagcatac
ggtgctgcttacacgctacaagaaatgctaacggttaagtcggatgacgttaacggccgt
actaagatgtacaaaaacatcgtagatggtaaccacgcgatggaaccaggcatgcctgaa
tcgttcaacgtactgttgaaagagatccgctcgctaggtatcaacatcgagctagaagac
gaacagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (8)   
   Pfam (8)   
All databases (20)   

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