KEGG T00108: VV1

Vibrio vulnificus CMCP6: VV1_2003

Entry

VV1_2003 CDS T00108

Gene name

dnaX

Definition

DNA polymerase III subunits gamma and tau (EC:2.7.7.7)

Orthology

K02343

DNA polymerase III subunit gamma/tau [EC:2.7.7.7]

Organism

vvu Vibrio vulnificus CMCP6

Pathway

vvu00230	Purine metabolism
vvu00240	Pyrimidine metabolism
vvu01100	Metabolic pathways
vvu03030	DNA replication
vvu03430	Mismatch repair
vvu03440	Homologous recombination

Module

vvu_M00260

DNA polymerase III complex, bacteria

Class

Metabolism; Nucleotide metabolism; Purine metabolism [PATH:vvu00230]
Metabolism; Nucleotide metabolism; Pyrimidine metabolism [PATH:vvu00240]
Genetic Information Processing; Replication and repair; DNA replication [PATH:vvu03030]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:vvu03430]
Genetic Information Processing; Replication and repair; Homologous recombination [PATH:vvu03440]

SSDB

Motif

Pfam:

DNA_pol3_delta2 DNA_pol3_tau_5 DNA_pol3_gamma3 DNA_pol3_tau_4 AAA RuvB_N AAA_22 AAA_5 AAA_16 AAA_17 TIP49 AAA_14 SKI AAA_18

Other DBs

NCBI-GI:

326423917

NCBI-GeneID:

1178899

UniProt:

Q8DB24

Position

I:1998757..2000961

AA seq 734 aa
MSYLALARKWRPRQFKEVVGQGHVLTALENALEHNRLHHAYLFSGTRGVGKTSIGRLFAK
ALNCETGITSAPCGQCDTCREIEEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRF
KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPITV
DAIHQQLDFILAKEGVTAQARALGMIAHAADGSMRDALSLTDQAIALGNGQIETDLVSHM
LGTIDTDQAIHLLEAISSKQPQVAMDKIQQLAQNGAEWDGLLQQLATQLHRIAMYQLLPS
SLDKAQPDAEKIELLSRALSPQDVQLFYQIALKGRDDLSLAPNGRIGMEMIVLRMMAFRP
ADVSQANIISAQGADLASAPAAQSAAPQVSTSPAQTAPAMSAKPSAERVAPAERPQAVSH
APSRPTSSMNAPSSVAPQPVQTEMPPQYDAPPMDYADYPPMDDMPPMGYGYEDAAALQPE
PQPAPQPAPQHTPESASPASGGLTGLRHQLRSQRQGLAQNGGSKKSKAASAEKESVLDRV
AQKQATAAQVSPRQSLAPSEPEVKEDEPYQWRPSQPVVQSKSKELTPTEIKRALEHEKTP
EMAEKLVAESLEQSEWAKLITQLETAKLVEQLALNSAFNKDGSTIALTLRSHQQHLNTDK
AQKELLSALNETLGETCHLSVEVGEQGETPLELRERLYQQKLQQAFTSLENDTHVQFILR
RFSAELDRDSVRPV

NT seq 2205 nt +upstreamnt +downstreamnt
atgagttatttagctttagcgcgaaaatggcgtccgcgtcaatttaaagaagtggtgggg
caaggccatgtgctgactgccctagaaaatgctcttgagcacaatcgtctgcaccatgct
tacttgttcagtggcacacgaggtgtgggtaaaacctcgattggtcgcttgtttgccaaa
gctctcaactgcgaaacgggcatcacctcagcgccttgtggacaatgtgatacctgccga
gagattgaagaagggcgcttcgttgatctattggagattgacgccgcatcgcgtactaaa
gttgaagacactcgtgaactgttagacaacgttcaatacaaaccagcgcgcggtcgtttc
aaggtttacttgatcgacgaagtgcacatgctctcgcgtcactcttttaatgcgttactc
aaaaccttagaagagccgccagagtatgtgaaattcctattggcaacgacggatccacag
aaacttcctgtgacgattttgtctcgttgtttgcagttccaccttaagccgatcacggtt
gatgctatccatcaacagctcgattttattttggcaaaagaaggtgtcactgctcaagcg
cgtgcgcttggcatgatcgcgcatgctgccgatggcagtatgcgtgatgccctaagctta
accgatcaagcaattgcgttaggcaatggtcagattgaaaccgatctggtcagccatatg
ttaggtaccattgacaccgatcaagcgatccatctcttagaagccatcagcagcaagcag
ccacaagtggcgatggataagattcagcagctcgcgcaaaatggtgcggagtgggatggt
ttgttgcaacaattggcgactcaactgcatcgcattgccatgtaccagctgttgccttca
agcctagacaaagcgcagcctgatgcagaaaaaattgagctgcttagccgagcactgtca
ccacaagatgttcagctgttttatcagatcgccttaaaagggcgtgatgacctctctttg
gccccaaatgggcgtatcgggatggaaatgattgtgttgcgtatgatggcatttcgtcct
gcggatgtgtcgcaagcgaacatcatttctgcgcaaggtgcggatctagcatcagctccg
gcagctcaaagtgccgctcctcaagtgagtacgtcgccagcccaaacggccccggcgatg
agcgcaaagccaagcgctgaacgggttgctcctgcagaacgtcctcaagcggtcagtcac
gcgccatcgcgtcccacttcatcgatgaacgccccaagttctgtggcccctcagcctgtt
cagacagagatgccacctcaatatgatgcgccaccgatggattatgccgattatccacct
atggatgacatgccgccaatgggttatggctatgaggatgcagccgcattgcagcctgag
cctcaacctgcgcctcaacctgcgccgcagcacacgcctgaaagcgcaagtccagcttct
ggtggcttaaccggtttgcgtcatcaattgcgttctcaacgtcaagggttggcacaaaat
ggtggctcaaaaaagtctaaagcggcatctgctgagaaagagtcggtcctcgatcgagtc
gcgcaaaagcaggcaactgcagcgcaggtgtcgccacgtcaaagccttgcgccgtcagag
cctgaagtaaaagaggatgaaccctatcaatggcgtccgagtcagcctgtggtgcagtct
aagagcaaagagctgacgccgacggaaattaaacgtgcacttgagcacgaaaaaacgcca
gaaatggcggaaaaactcgttgcagaatcgctcgagcagagtgagtgggcaaaactgatc
actcagctcgaaacggcaaaattggtggaacagttagcgctcaactcggcgtttaacaaa
gatggttcaaccatcgctttgacgctacgtagccatcaacaacatttaaataccgataaa
gcgcaaaaagagctgctctcagcgctcaacgaaacgctgggtgaaacttgccatctctct
gtggaagtcggagagcaaggtgagactcctctagagttacgcgaaaggctttatcagcaa
aaattacagcaggctttcactagcctggaaaatgacacccatgttcagtttatactgcgc
cgattcagtgcagaactggacagagacagtgttcgccctgtctga

All links

Pathway (7)   
   KEGG PATHWAY (6)   
   KEGG MODULE (1)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (5)   
   KEGG ENZYME (1)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (14)   
   Pfam (14)   
All databases (39)   

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