KEGG T00108: VV1

Vibrio vulnificus CMCP6: VV1_3018

Entry

VV1_3018 CDS T00108

Definition

ribonuclease E (EC:3.1.4.-)

Orthology

K08300

ribonuclease E [EC:3.1.26.12]

Organism

vvu Vibrio vulnificus CMCP6

Pathway

vvu03018

RNA degradation

Module

vvu_M00394

RNA degradosome

Class

Genetic Information Processing; Folding, sorting and degradation; RNA degradation [PATH:vvu03018]

SSDB

Motif

Pfam:

RNase_E_G S1

Other DBs

NCBI-GI:

326424118

NCBI-GeneID:

1179847

UniProt:

Q8D8G0

Position

I:3080992..3084102

AA seq 1036 aa
MKRMLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDY
GAERHGFLPLKEIAKEYFPDGYSYQGRPSIKEVLTEGQEVIVQIEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSTLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLKHWAAIKDASESNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERA
KEHIQLVRPDFVNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLREAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLAL
SVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETP
HFEVIRVREGEEVDLLSYLLPKKLEAMKEAEGKESPETEYKPKKIEEPVLKGFASPAQSV
PAPAPKAAVAKVANEKPQAEEKPGLFGRLIKALGSFLFGSAEEKVEAEKTERKDEREKGN
RRQKRDRNDRRRNNRDNNRENNRDRDGKRRQRNRDENVVETQDEAIKPRSQQKRKQRPAQ
NKADNAVESKANAKVAEKGLQLAAEAQGASKQEGQKTPSKAEKVKERRQRRKLNKPVRVK
DQLEQAEETLMDAAPVVEAETFNKQNTPASEKAEKVVADTVDAMDNSENEEKPRRNRRSP
RHLRASGQRRRRGRDRRPNPFRLRKGGVASPEMAMGKVMPRYIPKPVAKKEEMVKEEVVT
AVTAVPAMQGGVACPEMAMGKVIIRRDITAAQTPTETKPKRSKSRNNKPAKAAVVEVVTE
EPTVENAVVATIQETDVQKIEPQVESVSQPVEQVSVETTEVVAEIVETTEVVAEVESATE
TVANETEATVAVVESSIKVIKAQASAPMTKAPGPQELIEIQVVAAPFKAERYAQRGAGSQ
VATSQASAAMTKPEMV

NT seq 3111 nt +upstreamnt +downstreamnt
atgaaaagaatgttgattaacgcaactcaaaaagaagagttgcgtgtcgctttggttgat
ggccagcgactttacgatctagatatcgaaagtcctggacatgagtcaaaaaaagcaaat
atctataaaggacgtattacccgtgttgaacctagcttggaagctgcatttgtagattac
ggtgctgagcgtcacggtttccttcctctaaaagaaattgccaaagaatacttcccagat
ggttactcttaccaaggtcgcccaagcatcaaagaggtgctgactgaaggtcaagaagtc
atcgttcaaatcgaaaaagaagaacgtggtagcaaaggtgcagcactgaccacctttatt
tccctcgcgggtagttacttagttcttatgccaaacaacccacgtgctggcggtatttcc
cgtcgtatcgaaggggatgagcgcaccgaattaaaatctgcattaagcacactggaactg
ccgcaaggtatgggtcttatcgtgcgtacggcaggtgttggtaagagcgctgaagagcta
gagtgggatttaaacgttctgcttaagcactgggccgccatcaaagatgcttctgaatcc
aacccagcacctttcttgattcatcaagaaagtaacgtcatcgttcgtgcgatacgcgac
tatctacgccgtgacattggtgaaatccttattgatagcaacaccatctatgaacgtgcc
aaagaacacattcagttggttcgcccagattttgttaatcgcgtgaagaagtatgacggt
gaagtgccactgtttagccactaccaaattgaaagccaaatcgaatcggctttccaacgt
gaagtgcgtctgccttccggtggctctatcgttatcgacccaacagaagcactgacgtct
atcgatatcaactctgctcgcgcgacaaagggcggcgatatcgaagaaaccgcactgaac
accaacttagaagctgcagacgaaatcgctcgccagttgcgtcttcgtgaccttggtggt
cttgtggtgatcgacttcatcgatatgaccccagtacgccatcaacgtgaggtagaaaac
cgtctgcgtgaagccgttcgtctcgatcgcgctcgcgttcaaattggtcgtatttctcgc
tttggtctattagagatgtctcgtcaacgcttgagcccttctcttgcagaagcaagtcat
catatctgtcctcgttgtagtggtacaggtgtggttcgcgataacgaatctcttgcgctt
tctgttcttcgtcttatcgaagaagaagcactgaaagacaacactgcacaagtattggct
gttgtgccagtgcctatcgcctcttaccttcttaatgaaaaacgtcgctctgtgaaccac
attgaacgtattcaagaagtgaagatcaccgttgttccaaactcggatatggaaacgccg
catttcgaagtgattcgtgtgcgtgaaggtgaagaagtggatctgctttcttacctgcta
ccgaagaaactcgaagcaatgaaagaagcggaaggcaaagagagcccagagactgaatac
aaaccgaagaaaatcgaagagccggtgcttaaaggttttgcttctccagctcaatctgta
ccagcacctgcgccaaaagcagcagttgctaaagtggcaaatgaaaaaccacaggcagaa
gagaaaccaggtttgtttggtcgcttaatcaaagcattgggtagcttcttattcggttct
gctgaagaaaaagtagaagcagagaagaccgaacgcaaagatgagcgtgagaaaggcaac
cgtcgtcaaaaacgtgaccgtaacgatcgtcgtcgtaataaccgcgacaacaaccgtgaa
aacaatcgtgaccgtgatggcaaacgtcgtcagcgcaatcgtgatgaaaacgtcgttgag
actcaggatgaagcaatcaaaccacgttctcagcaaaagcgtaagcaaagacctgctcaa
aacaaagcagacaatgcagtagagagcaaagcaaacgcgaaagtggcagagaaaggccta
cagcttgctgctgaagcacaaggtgcgtcgaagcaagaaggtcagaaaacgccaagcaaa
gcggagaaagtgaaagagcgccgtcagcgccgtaaactcaacaaacctgttcgcgtgaaa
gatcagctagaacaagctgaagaaacgcttatggatgcagctccggtcgttgaagcagaa
acctttaacaagcaaaacacacctgcatctgagaaagcagagaaagtggttgctgacact
gtcgatgcaatggacaacagcgaaaacgaagaaaaaccacgtcgtaatcgtcgttctcct
cgtcatctacgtgcaagtggacaacgtcgtcgtcgcggtcgtgatcgtcgccctaaccca
ttccgcctacgtaaaggtggggttgcttctccagaaatggccatgggtaaagtgatgcct
cgttacattccaaaaccagttgctaagaaagaagagatggttaaggaagaggttgtaaca
gccgttactgcagtacctgcaatgcaaggtggcgtcgcatgtccagaaatggcgatgggt
aaagtgatcatccgtcgcgatatcaccgctgctcaaacaccgactgaaacgaaaccaaaa
cgttctaaatctcgtaacaacaagccagcgaaagcagccgttgttgaagtggttactgaa
gaaccaacggtagagaacgcggttgtagcaacgattcaagaaactgatgttcagaaaatc
gagcctcaagttgaaagtgtttcgcaaccagtagaacaggtttctgtagaaactacagaa
gtggtggcagaaatcgttgaaactactgaggttgtcgctgaggtggaaagcgcaacggaa
acagttgcaaacgaaactgaagcaactgtggcagtagtcgaaagctctatcaaggtaatt
aaagcgcaagcttcagcaccgatgactaaggcacctggccctcaagagcttattgagatc
caagttgtcgcggcaccatttaaagcagagcgctatgcacagcgtggtgcgggtagccaa
gtggcgacaagtcaagcctcagcggcaatgacaaagccagaaatggtgtaa

All links

Pathway (2)   
   KEGG PATHWAY (1)   
   KEGG MODULE (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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